barSeed - Barley Seed Development Database

Probe CUST_6083_PI390587928

Source Contig U35_10128

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6083_PI390587928	Hv_44K_v2	TCCCATTCCATCGCTTTAGTTGTTCAACAGCCAACACCATGAGCTCTCGGATGGCCGGAG	105	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369112	1291	2e-24	56 - 115	100	60 / 60	plus	ABC05887 ABC05888 ABC15936
MLOC	MLOC_34173.1	592	2e-24	301 - 360	100	60 / 60	plus	None
JLOC1	JLOC1_22039.1	349	8e-25	47 - 106	100	60 / 60	plus
Harvest21	ABC05889	595	3e-25	30 - 89	100	60 / 60	plus
Harvest35	U35_10128	676	3e-25	106 - 165	100	60 / 60	plus

Contig Sequence (676 bp)

>U35_10128 676 Hv_44K_v2
GAGACACGCGAGCCCCCTATAAAATCTTCTCCGGCGAGACGCTGTCGAGCCATCGGTCAG
TTTACCAGATCAACACCAACACAAATCACTTCCAACAAAAACACATCCCATTCCATCGCT
TTAGTTGTTCAACAGCCAACACCATGAGCTCTCGGATGGCCGGAGCCACGCTTCTGCGCC
ACCTGGGCCCCCGCCTCTTCGTCGCCGCCGAGCCGGCGTCCGGGCTCGCCGCGGGCGCGA
GGGGCATCATGCCCGCCGCCGCAAGGATCTTCCCCGCGCGGATGGCCAGCACCGAGGCCG
CCGCCCCGCATGCCAAACAAGAAGATGATGCCAAAAGCCCCCAGGCGGCCGCGACTCCAG
CGCAGCAGAACAAGAAGGCCGTGGTGAGCTACTGGGGCATCGAGCCGCGGAAGCTCGTCA
AGGACGACGGCACGGAGTGGCCGTGGTTCTGCTTCAGGCCGTGGGACACGTACCGGCCGG
ACACGTCCATCGACGTGGCCAAGCACCACGAGCCCAGGGCGCTGCCGGACAAGGTGGCCT
ACTTCGTCGTGCGGTCGCTCCGCGTGCCCCGGGACCTCTTCTTCCAGCGCCGGCACGCGA
GCCACGCGCTGCTGCTGGAGACGGTGGCGGCCGTGCCCCCCATGGTGGGCGGCGTGCTGC
TGCACCTGCGCTCGCT

Homology of Contig U35_10128 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g51160.1	336	5e-74	protein\|transposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi5g20557.1	331	4e-77
Arabidopsis v10	None