barSeed - Barley Seed Development Database

Probe CUST_6082_PI390587928

Source Contig U35_10129

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6082_PI390587928	Hv_44K_v2	GGGCGTGAAGTAGCCCGAATTTCCTTTTTTATGATGTACTTTGTCAATTCAGAGATAAAA	703	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.769	3.597	1.273	0.597	0.393	0.248
Raw	94.457	141.338	43.012	33.688	5.502	3.214

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_10934.8	1862	4e-23	1742 - 1801	98	59 / 60	plus
JLOC1	JLOC1_10934.7	1858	4e-23	1738 - 1797	98	59 / 60	plus
JLOC1	JLOC1_10934.6	2544	4e-23	2424 - 2483	98	59 / 60	plus
JLOC1	JLOC1_10934.5	2088	4e-23	1968 - 2027	98	59 / 60	plus
JLOC1	JLOC1_10934.4	2125	4e-23	2005 - 2064	98	59 / 60	plus
JLOC1	JLOC1_10934.3	2129	4e-23	2009 - 2068	98	59 / 60	plus
JLOC1	JLOC1_10934.2	2125	4e-23	2005 - 2064	98	59 / 60	plus
JLOC1	JLOC1_10934.1	2581	4e-23	2461 - 2520	98	59 / 60	plus
Harvest21	ABC20894	858	3e-25	96 - 155	100	60 / 60	minus	ABC20894
Harvest35	U35_10129	858	3e-25	704 - 763	100	60 / 60	plus

Contig Sequence (858 bp)

>U35_10129 858 Hv_44K_v2
AGTTCTGTGCAGTGAATCAGAGACTGCCACGGTGGAACCCGGACTGTACGTGGTAGGATG
GTTGAAGAGAGGACCAACTGGGATTGTTGCTACAAATCTCCATTGTGCCGAAGAAACGGT
GGATAGCATCCTTGAAGACGACAGGAAGGGTGTATTCACGGACCCATCTGGTCCGAAAAG
GCGAGGCCGTCGGGGACTACTTGAGATTCTAGAACAGAAGAATGCCCGCTACGTGCCCTT
CGATGGCTGGGAGAAGATTGACTCCAAAGAGAAGGCGGCCGGCGAGCTGAAGAACAAGCC
TAGGGAGAAGATCACCAGATGGAATGAGCTCCTGGAAGCTGCAAGGGAGGGTTAATTGAA
GGGCCACACATACGCATCTGAAGGAGTTGCTGGTTCAGGCGTAAACCGAATCAAAGAAAC
AGACCACGAGGCACAATCTGAATACTGAAAGAACAGCAAATCACGTACATACTGAACCAA
GGAAAGTCAAGTGCTAATGCCGTCTTAGCTATGAATCATAGCGTACCAATGCTGGTTGAA
ATTCCCAAAGGCCCGACCACTGAAGCCACATGAATTGGTTGTATTCGTGAGATGCCACCT
CATCTAAATCATGAGAATTTCTTTTGACAATGAACATGTTCAGTCCACCACTAACACTAA
AAAACAGTAAGCTTAGAGCATCTCCAGCAGTTCGGCTTCTCAAGGGCGTGAAGTAGCCCG
AATTTCCTTTTTTATGATGTACTTTGTCAATTCAGAGATAAAATCCAGAATTGTATCATA
AAGTGAAATAATGACTAAGAATAATACGATTATCAATAAGAAATCGTGATGCGAAAAAAA
AAACAAAAAAAGAAAAAC

Homology of Contig U35_10129 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g17700.1	500	1e-52	protein\|pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed
Brachypodium v1_2	Bradi2g32530.1	498	3e-52
Arabidopsis v10	None