barSeed - Barley Seed Development Database

Probe CUST_6081_PI390587928

Source Contig U35_22100

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6081_PI390587928	Hv_44K_v2	AGCAATTTTGCATGCCTTTATCAGTCTATCCGTATACCCCATTGACCCGTTCCTTGTAAA	524	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.090	2.094	1.208	0.795	0.322	0.378
Raw	158.055	245.176	123.432	127.331	18.805	24.014

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC26922	358	3e-25	285 - 344	100	60 / 60	plus	ABC26922
Harvest35	U35_22100	598	3e-25	525 - 584	100	60 / 60	plus

Contig Sequence (598 bp)

>U35_22100 598 Hv_44K_v2
TAAAGCCAAAGAATCAGCTTTTGCAGAGGCAAGCCAAACTGTTGATGTGGAAGATGCCAA
GCACATCCTTCAGAATGACAAACTGCTGGGTGACAAAGTAGAGGAAATCGTCAAAGAGTG
GGATGCCCAGAAGGAAGAGTTCTACCAGAAAACAGGTGTATCTCCTCATGATGAAATGGT
GGTGGTTGACAACGACGAATCTGGAGAATTCTATGACGAAAATGAAACCGACGCCTTTGA
TGAGTTAGAACAGCTGCTGCTGGAGTGAGGGAAAGCATCCAGTAGTCTCTGAATGACTGA
AGAACTGTTCCTCTGCTCATGTCCCTGCTCATGTCATTTTGCCACGGCATGGAATCGACA
TTGGGCTGACTGAACAGGCCCAAAATATTCTTGAAAGCATTTTTTGTCACAGCATGCCTG
AAGCAAAAAAAAAAATGTAGGTAGTTCTATTTTGGTCGGATGAAATGTTGCCTGATGTAC
ATATCTCCGTTGATCAAACTGGGGTTTCCTAATTTTGGGAATGTAGCAATTTTGCATGCC
TTTATCAGTCTATCCGTATACCCCATTGACCCGTTCCTTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_22100 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None