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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_6077_PI390587928Hv_44K_v2TAATTAAGCAAGCACAAGACAAGGACTTGGAACCTGAGCCAGGACGCACAATGATGGAAT421GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_73160.449963e-213150 - 32099758 / 60minus ABC06412
MLOCMLOC_73160.256193e-213430 - 34899758 / 60minus ABC06412
MLOCMLOC_73160.358523e-213663 - 37229758 / 60minus ABC06412
MLOCMLOC_73160.155543e-213649 - 37089758 / 60minus ABC06412
JLOC1JLOC1_48690.255862e-211826 - 18859758 / 60plus
JLOC1JLOC1_48690.157182e-211826 - 18859758 / 60plus
Harvest21ABC216035776e-2230 - 899758 / 60plus
Harvest35U35_221049683e-25422 - 48110060 / 60plus



Contig Sequence (968 bp)

>U35_22104 968 Hv_44K_v2
GGGAAGGTCCCTGCCCCTGCCATTTTGAAACCAAGGCCGATTTGGACTGGCAAACAAGTT
TTCAACTTGATTATCCCCAAGTTAATTAATTTAATTAGATTTTCAGCCTGGCACGCTGAA
ACAGAAAATGGATTTACAACTCCTGGTGACACTGTGGTCCGGATAGAGAAGGGGGAACTT
CTATCTGGTACACTTTGCAAAAAAACACTTGGGGCATCAAGTGGAAGTCTTATTCATGTT
ATTTGGGAAGAGGTAGGGCCAGATGCCGCACGGAAGTTCTTGGGTCATACACAGTGGCTG
GTAAACTACTGGCTTCTGCAAAATGGTTTCAGTATGGGAATTGGGGATACAATTGCAGAT
GCTGATACTATGGAAAAGATTAATGAGACAATCGCAAATGCTAAGGCTGAAGTGCGTGAG
CTAATTAAGCAAGCACAAGACAAGGACTTGGAACCTGAGCCAGGACGCACAATGATGGAA
TCATTTGAAAACCGAGTAAATCAGGTTCTTAACAAGGCTCGTGATGATGCTGGAAGTAGT
GCTCAGAAGAGTTTGTCTGAGAGCAACAATTTGAAAGCTATGGTCACTGCAGGCTCAAAA
GGCAGTTTCATTAATATTTCGCAAATGACTGCTTGTGTCGGACAGCAGAATGTTGAGGGC
AAGCGGATTCCATTTGGTTTTGTTGATCGTACATTGCCCCACTTCACGAAAGATGACTAC
GGCCCCGAAAGTCGTGGGTTTGTTGAGAACTCCTACCTTCGAGGTCTGACACCACAGGAA
TTTTTCTTCCATGCTATGGGTGGTAGAGAAGGTTTGATTGATACTGCTGTGAAAACCTCC
GAGACGGGATATATACAACGGAGGCTCGTGAAGGCTATGGAGGACATTATGGTGAAATAT
GATGGTACTGTTCGAAATTCGCTGGGTGATGTTATTCAATTCTTGTATGGAGAAGATGGC
ATGGATGC



Homology of Contig U35_22104 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os05g05860.118720.0protein|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2Bradi3g16660.118630.0
Arabidopsis v10AT4G35800.118390.0| Symbols: NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS | RNA polymerase II large subunit | chr4:16961115-16967892 REVERSE LENGTH=1839