barSeed - Barley Seed Development Database

Probe CUST_6069_PI390587928

Source Contig U35_10135

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6069_PI390587928	Hv_44K_v2	TGCCCATCATTGTCTCAATATATAGTGTATAGTAGTTCACACCAGTGTAAAATCTTCGGA	458	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1297.1	2374	2e-24	2210 - 2269	100	60 / 60	plus	ABC20393
JLOC1	JLOC1_795.1	2264	8e-25	2095 - 2154	100	60 / 60	plus
Harvest21	ABC20393	598	3e-25	81 - 140	100	60 / 60	minus	ABC20393
Harvest35	U35_10135	598	3e-25	459 - 518	100	60 / 60	plus

Contig Sequence (598 bp)

>U35_10135 598 Hv_44K_v2
AGATCACCTTTGATATCAGAAAACAGCCTGGAAAGCCGCAGGAGACTACCATCCATGCCA
CTTTTACAAATTTGACATCTAGCAATTATACAGATTTCATTTTTCAGGCAGCTGTTCCAA
AGTTCATTCAATTGCGACTGGATCCAGCTAGTGGTAACATTGTTCCAGCTAATGGGAAGG
GTTCAGTCACACAAGGTTTCAGTGTCACGAATAATCAGCATGGGCAGAAACCACTTGCAA
TGCGGATCCGGATGTCTTACAAAGTGAACGGCGAGGACAGGTTGGAACAAGGCCAAGTCA
GCAATTTTCCACCTGGAGTATAGGGTCATTTGTGTGTAACCTATGTTTTGTTGTGATAGC
TATGTTTGTGCCCGGGGCAGAGGGGAGATTCTTATCTCTTGTTATACTTTTTCGGCTCTT
ATTCCCCATTTGAGGGCACTTAAACAGATAGTCCAGCTTGCCCATCATTGTCTCAATATA
TAGTGTATAGTAGTTCACACCAGTGTAAAATCTTCGGAATCATCATAATGTATTTTCATG
CATGTGTATTTCACATTTAAAGATAATCAAAATTATTTGGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_10135 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g56110.1	890	5e-57	protein\|AP-1 complex subunit gamma-1, putative, expressed
Brachypodium v1_2	Bradi3g54597.3	898	3e-60
Arabidopsis v10	None