- Probe CUST_6067_PI390587928
- Source Contig U35_10137
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_6067_PI390587928 | Hv_44K_v2 | ATCTCTGCACTGTACTACTACGCATCGCCATGGCCATGAATGATAGCTCAGCTCAAAAAA | 439 | GeneList: salmon MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 8.737 | 7.132 | 1.600 | 0.686 | 0.151 | 0.198 |
| Raw | 398.153 | 541.366 | 99.156 | 69.052 | 3.920 | 7.528 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_66065.1 | 2563 | 3e-22 | 2399 - 2454 | 100 | 56 / 56 | plus | None |
| JLOC1 | JLOC1_43521.1 | 2527 | 1e-22 | 2290 - 2345 | 100 | 56 / 56 | plus | |
| Harvest35 | U35_10137 | 509 | 3e-25 | 440 - 499 | 100 | 60 / 60 | plus |
Contig Sequence (509 bp)
>U35_10137 509 Hv_44K_v2 GCAGCAGCAAGCCGCCGCGGAGCAGAAGCAGAACATCAANGCAACCGCAACCGCCACCGC CAGCGGCAAGAACAAGGCCGTCGCCGAGGTCGACGCCGCGACGAGCCAAGGCCAAGCGGA CGCCGGTAAAGAAAACGCGGCGGCGACGTCAGGTGAAGCGCCGGCGACCGTGAGCGCGCC AGCCGCCGCGTGCCGGAACAACGCGGTCTGCGCGGAAGTCGCCGGCGAGGAGTGCGTGCC GCCGCAGGGGCTGTTCGGCCTCCGCACCTTCTTCTCCAAGAAGGTGTACTGAACCACTGC TGCTGATCACGACTCACGGCGCCATGCTGCGTGGCACACGTCTCAGTGTATATAGAACCT CGAGCTACCATAGGGCTCGTGTCATCGATCCCGTCCGTCCGCCACCCGTTCGCTAGCTTA AGCATTCTTTTTCTCTCTTATCTCTGCACTGTACTACTACGCATCGCCATGGCCATGAAT GATAGCTCAGCTCAAAAAAAAAAAAAAAA
Homology of Contig U35_10137 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |