barSeed - Barley Seed Development Database

Probe CUST_6066_PI390587928

Source Contig U35_10138

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6066_PI390587928	Hv_44K_v2	CGCTGAATTCAGAGTTCTACTAGTTTTGTACTCTGATGAAGAGCTATACTTATTATGTTG	92	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68317.1	840	2e-24	33 - 92	100	60 / 60	minus	ABC19400 ABC24835
Harvest21	ABC19400	216	3e-25	65 - 124	100	60 / 60	minus	ABC19400
Harvest35	U35_10138	216	3e-25	93 - 152	100	60 / 60	plus

Contig Sequence (216 bp)

>U35_10138 216 Hv_44K_v2
TCCGCGTGATGACGGGACCCCGTCCGATGTCATATGCGTGTAAACTGGCTTGGCGAATAG
CTGGTGTACCTTGTGTGCTTGTCGAGTGTGACCGCTGAATTCAGAGTTCTACTAGTTTTG
TACTCTGATGAAGAGCTATACTTATTATGTTGTGATTTGTGAAATGAGTTGTTATATAAT
GGAGATTGCTCTGGTTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_10138 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None