barSeed - Barley Seed Development Database

Probe CUST_6060_PI390587928

Source Contig U35_22114

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6060_PI390587928	Hv_44K_v2	AAGAAGCACGAGCTGCTGTCCGCGGAGATCGAATACATGCAGAAGCTGGAGGCTGATCTG	527	GeneList: darkmagenta MasterList: Transcription_factors_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	11.741	5.576	1.160	0.625	2.889	0.313
Raw	288.310	233.682	39.591	37.681	48.638	5.946

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65843.1	1347	7e-23	406 - 465	98	59 / 60	minus	ABC19220
JLOC1	JLOC1_43352.1	1288	4e-23	700 - 759	98	59 / 60	plus
Harvest21	ABC15459	588	3e-25	528 - 587	100	60 / 60	plus
Harvest35	U35_22114	588	3e-25	528 - 587	100	60 / 60	plus

Contig Sequence (588 bp)

>U35_22114 588 Hv_44K_v2
GCCCTCTCGGCTGCAGCTTCCTGATTTCACTCCCCCGCCACTCCCCCTGTCCATCACCTC
CGCTTCGGGATTGATTGGATTCTGGGTTGGAGCTGCTTGCTACCATGGGGAGGGGGAGGA
TCGAGATCAAGAGGATCGAGAACACGACGAGCCGCCAAGTGACCTTCTGCAAGCGCAGGA
ACGGGCTGCTCAAGAAGGCCTACGAGCTCTCCGTCCTCTGCGAAGCCGAGATCGCCTTGA
TCGTCTTCTCCGCCCGCGGCCGCCTCTACGAGTATGCTAGTAACAGCACGAGGACGACGA
TCGACAGGTACAAGAAGGCCTCCGCAAGCTCTTCTGGCTCTGCTCCAGCCATAGACGTCA
ATTCTCAGCAATACTTTCAGCAGGAATCTGCAAAACTGCGCCAGCAGATACTGTCCCTGC
AAAATGCTAACAGGCACTTGATGGGCGATTCCGTCGGCAACTTGACCGTCAAGGAACTCA
AGACCCTCGAGAATCGGCTCGACAAGAGCATCGGGCGGATCCGATCAAAGAAGCACGAGC
TGCTGTCCGCGGAGATCGAATACATGCAGAAGCTGGAGGCTGATCTGC

Homology of Contig U35_22114 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g66290.2	266	2e-78	protein\|OsMADS21 - MADS-box family gene with MIKCc type-box, expressed
Brachypodium v1_2	Bradi2g25090.1	244	2e-87
Arabidopsis v10	AT4G18960.1	252	3e-71	\| Symbols: AG \| K-box region and MADS-box transcription factor family protein \| chr4:10383917-10388272 FORWARD LENGTH=252