barSeed - Barley Seed Development Database

Probe CUST_605_PI390587928

Source Contig U35_40351

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_605_PI390587928	Hv_44K_v2	GACGATGCCATACAAAAGGAAAATGTTATTCAGGAAGATATGAACACTACTACTTCAGAG	314	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1607.3	4994	2e-24	2555 - 2614	100	60 / 60	plus	ABC14256
MLOC	MLOC_1607.5	4904	2e-24	2628 - 2687	100	60 / 60	plus	ABC14256
MLOC	MLOC_1607.6	5024	2e-24	2605 - 2664	100	60 / 60	plus	ABC14256
MLOC	MLOC_1607.7	4491	2e-24	2194 - 2253	100	60 / 60	plus	ABC14256
MLOC	MLOC_1607.4	3350	2e-24	2553 - 2612	100	60 / 60	plus	None
MLOC	MLOC_1607.2	4869	2e-24	2568 - 2627	100	60 / 60	plus	ABC14256
MLOC	AK376826	4867	3e-21	2537 - 2593	98	56 / 57	plus	ABC14256
JLOC1	JLOC1_979.2	5174	8e-25	2554 - 2613	100	60 / 60	plus
JLOC1	JLOC1_979.1	5166	8e-25	2546 - 2605	100	60 / 60	plus
Harvest35	U35_40351	453	3e-25	315 - 374	100	60 / 60	plus

Contig Sequence (453 bp)

>U35_40351 453 Hv_44K_v2
AAGAAAATGAAAAACAAGCTCAACTGGAGAGTAATGATGGACGAGCTTGTACAAACACAG
ATTATCCGCAGGGGTCTTCTCCAGTGTATGATGTATCCACAAGTACTCATACTGCAGGGC
CATCTTGCAGCCCAAAGGTTCAGGACAATGATGCAATCGTGTCTGCAGCCAGCATTCATG
AATTTCCCAAAGAGGAAGTTATCAAGCAAAACACTTCGAATTCTCATAAATCAGCATGCA
ACACAAATGATCCTTATATTGGAGAAATCTCCATGGTGTCCCAGAAGGGACCTTTGATGG
ATGAGTTGGTAGCCGACGATGCCATACAAAAGGAAAATGTTATTCAGGAAGATATGAACA
CTACTACTTCAGAGATCAATAGTACACAATTAAATGAGAATTCTGATAGCCATATTATAT
CAGAAAATAATCTGGAGGATGAAATATCTTTTC

Homology of Contig U35_40351 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None