barSeed - Barley Seed Development Database

Probe CUST_6056_PI390587928

Source Contig U35_22118

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6056_PI390587928	Hv_44K_v2	CCCTACTTACTTTATGGAAATGATCACAATGTATAAGAGCAATTCCAACAGTCTCATATC	1185	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.256	0.214	0.437	2.615	2.260	2.429
Raw	2.529	2.835	12.109	113.652	33.654	40.733

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_22118	1285	3e-25	1186 - 1245	100	60 / 60	plus

Contig Sequence (1285 bp)

>U35_22118 1285 Hv_44K_v2
GCGTGCTTTGAAGAGTTGGTCCGCAGATGGACGGAGTCCATCGGCTCTGATGGTACGCGC
GAGCTCGATATTTGGCCGGAGCTCAAAAACCTGTCCGGTGATGTCATTTCTCGCACCGCA
TTCGGCAGCAGCTACCTTGAAGGAATGAAGATATTTCAGCTGCAAACCGAGCAAGCAGAG
CGCCTCGTGACAAACATTCGGAGGATTCTTATTCCCGGTTACTTATCTTTGCCAACCCCA
AACAATAGAAGGATGTATCAGGTGAACAACGAGATTGAATCGATTATACGAAGTTTAATT
GTGAAAAGAACTAAAGCGATCAAGGAAGGTGAAAGGACCAAAGATGACTTACTTAGCTTA
TTGCTAAAGTCAAACATGATGCATATAGATAATAATGGTCAATCCGACATGGGGATGACA
ATCGAAGATGTCATCGAGGAGTGCAAGACGTTCTTCTTGGCAGGAATGGAGACAACATCG
GTACTACTCACATGGACCATGATCGTTCTAAGCATGCACCCAGAGTGGCAGAACCGTGCA
AGGGAGGAGGTCCTAGATTTGTTTGGGAAAAGCAAACCTGGATACGAAGGCCTAAACCGA
CTTAAAACGGTCACCATGATCCTCTATGAGGTTCTTCGGTTGTATCCCCCAAGCATCCAT
TTTAGCAGGAAGACATGCAAGGAGGTGATGATAGGAGACAAAACGTACCCAGCTGGCATG
ATGATTGAGCTCTCCGTACTACTCATGCACCATGACCCTGACATTTGGGGCAGCGATGTG
CATGAATTCAAGCCGGAGAGGTTCGCTGAGGGGATCTCCAAAGCGTCCAATAATTCAGGC
GCGTTTCTTCCTTTCGGCTGGGGACCAAGGATTTGCATCGGCCAGAATTTTGCGCTTATT
GAGGCCAAGATGGCGATTTGCATGATCCTTCAAAGCTTCGACTTCATGCTTGCCTCATCC
TATACTCATGCACCATATACCATGGTAACGCTGCATCCAATGCATGGCGCGCAAATTAGG
CTTGGGCTCATATGATTCCTTTCATATCTGGTGGTGTACGCTTCTATTTTCTTTGATAAT
TTTGTGTGTGTGTTACGTATCTACTCGAAGGAAGATGCCTCGCGGGCAAACTTGGACTAT
CTCACCAGCCGAGTGTCCAAGGACATCACCAATTTATAAGACGGGCCCTACTTACTTTAT
GGAAATGATCACAATGTATAAGAGCAATTCCAACAGTCTCATATCTCTAAATTAAACCTT
GTTTATGCGAAAAAAAAAAAAAAAG

Homology of Contig U35_22118 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g43750.1	529	2e-172	protein\|cytochrome P450 72A1, putative, expressed
Brachypodium v1_2	Bradi2g41110.1	550	0.0
Arabidopsis v10	AT3G14680.1	512	9e-120	\| Symbols: CYP72A14 \| cytochrome P450, family 72, subfamily A, polypeptide 14 \| chr3:4934478-4936462 FORWARD LENGTH=512