barSeed - Barley Seed Development Database

Probe CUST_6053_PI390587928

Source Contig U35_10141

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6053_PI390587928	Hv_44K_v2	GCGTCACAAGAAATTTTCATTGATGAGGAAACAGGGTAGTTGACATTTCAAAAAGAAAAG	1124	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.740	1.511	1.074	0.910	0.390	0.461
Raw	503.084	688.099	423.257	567.326	84.914	111.251

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54108.5	2337	2e-24	2105 - 2164	100	60 / 60	plus	None
MLOC	MLOC_54108.4	4102	2e-24	3758 - 3817	100	60 / 60	plus	None
MLOC	MLOC_54108.1	3292	2e-24	2950 - 3009	100	60 / 60	plus	None
MLOC	MLOC_54108.6	907	2e-24	539 - 598	100	60 / 60	plus	None
MLOC	MLOC_54108.2	3120	2e-24	2778 - 2837	100	60 / 60	plus	None
MLOC	MLOC_54108.3	2649	2e-24	2368 - 2427	100	60 / 60	plus	None
JLOC1	JLOC1_34818.4	2492	8e-25	2062 - 2121	100	60 / 60	plus
JLOC1	JLOC1_34818.3	2747	8e-25	2317 - 2376	100	60 / 60	plus
JLOC1	JLOC1_34818.2	2771	8e-25	2341 - 2400	100	60 / 60	plus
JLOC1	JLOC1_34818.1	2581	8e-25	2151 - 2210	100	60 / 60	plus
Harvest21	ABC35560	604	3e-25	474 - 533	100	60 / 60	plus
Harvest35	U35_10141	1255	3e-25	1125 - 1184	100	60 / 60	plus

Contig Sequence (1255 bp)

>U35_10141 1255 Hv_44K_v2
GTCAAGCGGCAAAGACAAGGACAAGCTGACGGAAGTCTATTGTGTTTCAAATATACATCC
TCAGGGTCCTGTCCTCGAGGGAGTAAATGCAACTTCAGGCATGATGAGGAAGCCAGGGAG
CATTGTCAGAGAAATGTCTGTTTTGATTTTCTAAACAAGGGAAAATGTGAGAGGGGCCCT
GAATGCAGGTTTGCTCACAGCCTTACTGAAGAGGCTACTCTAAAGGATGCAAAGCCCCGT
AGTGAACGACGACGTGTTGAGAGCAGTTGCTGGTTCTGTTTGTCAAGTCCAGATGTCGAG
TCACATCTTGTTATCAGTATTGGAGATGGTTACTACTGTGCGCTTGCGAAGGGACCACTT
GTTCCGGACCATGTTCTAATGATACCGGTTGAACACTTCCCTACTACAATAACGATGCCT
GTGGAACCTGAGGCAGAGCTCAGGAGATATAAGAATTCACTGAGTAAGTATTTCAAGAAA
CAAGGAAAAGCAGCAGTATATTTTGAGTGGGTTTCACAGCAGTCTCGCCATGCAAACCTT
CAGGCTGTCCCTCTGCCATTGTCAAAGGCAGCTAATGTTAAGAAGATCTTCCACTTAGCA
GCCCAACGGTTGGGATTTGAATTTTCTGTTGTGAATCCAGATGGTGATGCTAATCAAGGT
AGAGAACTGTTAAGGTCACAGTATGATGGCAAATCAGGCTTGTTTTATGTAGAGCTCCCA
GATGGTACATTACTCTTGCACATGATTGACAGTGGTGAGAAATTCCCTGCCCAGTTTGGA
CGTGAGGTATTGGCAGGATTGTTAAGCATGGCAGATCGTGCAGACTGGAGGAACTGTAAG
CTTTCCAAGGAAGAAGAAGTTAAGATGGTGGATGATTTTAAACAAGGGTTCCGCGAGTTT
GATCCTGCTGAATGACAACATTCTCAAGCCGCGAAGCTCTTGGAGGTTGATGATGTATGC
CTGATGTTTATGACGTCTTAAGCTAAGCCACTGCGACAAGTCCTAGCGTGTCCCCAACAC
GTGAGCCAGGCCATGATCCAGAACATGCTGCGTGTTCGTGGTTTTGTGGCTGACCGTTAC
GAGTACTTTGGTTGGTCAGGTATAACTACCAGAAATGAGAATCGGCGTCACAAGAAATTT
TCATTGATGAGGAAACAGGGTAGTTGACATTTCAAAAAGAAAAGAAAAGAAAAAAGAAAC
AGGGTAGTTGATGGATTCAACCATTCTTTTTGNTATGGATCTGCCATACCGAGTC

Homology of Contig U35_10141 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g19940.2	535	0.0	protein\|cwfJ-like family protein, putative, expressed
Brachypodium v1_2	Bradi4g28877.1	609	0.0
Arabidopsis v10	AT5G56900.2	596	1e-118	CwfJ-like family protein / zinc finger (CCCH-type) family protein \| chr5:23019750-23022670 REVERSE LENGTH=596