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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_6042_PI390587928Hv_44K_v2TGTGTCAGGACAAAGTTGCGATGCTAATTTCTTCGAATGGATTGATCATCCATCAAAAAA1609GeneList: turquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.5031.6521.1540.8950.3130.345
Raw 870.7031520.074918.1631141.332135.467164.862



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC0861216803e-2512 - 7110060 / 60minusABC08612
Harvest35U35_397516803e-251610 - 166910060 / 60plus



Contig Sequence (1680 bp)

>U35_3975 1680 Hv_44K_v2
GCTATATTTGGCGATCGCCAATCTGCTGGAACTAGCACCTGTGGCGATACACAGCCTACA
CCATCTTTTCCCAGACTAGATGGAACTGATTTTAAATTTGGTTTTCGGTTTGATGATTTG
GAATATGTTCGTCAAGAGGATGATAGAAGGACCCTCGAGGAACTTTATGCTTTCCGACTC
TTCTTCCTTGTGTAACTGAAAATGCCCCGTTGTCGGAGATTTTACCTTTGCAGAAAGATA
GTACACTTGCATCACGAGTTCTGAAGTTTATTCAGAGCATGAGTTTGAAAGACCCTCTTC
ATCCAGTGGGTATTATCCAAGAATGCCTTTCTAAATGTATAAAGAAACAGGTGGATCACA
TTGGCAAGCAAATCCTGTGCAAGCTAATGGGTGAATGGAGATTAATGGATGAACTGCTTG
TATTACGAGCTATCTATTTGCTAGGATCAGGTGACATGCTGCAGCAGTTTCTGATAACAA
TTTTTGATAAGCTCGATAAAGGAAATTCCTGGGACGATGATTTTGAGCTGAATACTTTGT
TGCAGGAATCCATAAGATATTCAGCTGATAAAATGCTCCTAACCGCTCCAGATTCGTTGG
TTGTTTCATTAGCAAAGCATGACACACGATATGATGAGGAAAGTGCACCAACTTCCAGAA
AAGGTCGTGCACAGGGTTTTGGCATCGATGCGCTTGATGTACTTAACTTCACATATAAGG
TGTCTTGGCCTCTTGATCTAATTGCCAATACAGAGGCTCTGAAGAAGTATAATAAGGTCA
TGGGGTTCTTACTGAAAGTCAAGCGTGCAAAGTTTGTTTTGGACGAAACCCGAAAGTGGA
TGTGGAAGGGCAGAGGCAGCACGACGCCTAATTTTAAACAACACTTAATAGTAGGGCAGA
AGCTCCTCCATTTTGTCGATGCATTTCATCAATATGTCATGGACCGAGTGTATCATAGTG
CGTGGACTGAGCTTTGTGATGGCATGGCATCTGCTACTACATTAGATGAAGTCATGGAAG
TTCATGAGGCATATCTTTCTTCTATTCAGAGACAATGCTTTGTGGCCTCGGATAAGTTGT
GGGCTCTGATCGCCAGTCGAGTCAAGACTATACTGGGATTGGCGTTAGACTTCCACAATG
TGGAGCAAACTCTCGGCACCGGAGGGACCGCGGCATCTGTTAGGGCAAGATGCGAGATGG
AGTTGGATCGGATCGAGAAGCAATTCGACGAGTGCGTCGTGTTCCTCTTGAGGATCCTAT
CTTTCAAGCTGAACGTGGGCCACTTTCCCCATCTCGCGGATTTGGTCACGAGGATCAACT
ACAATCACTATTACATGTCTGACACCGGAAGCTTCACTGCGATCCCTGGGTCCCGTGCTC
GGCAGCAGCCTTGATAGGATTGTAGGTGCTTTTCAGCTCCATTTGTGGGGAGTGTATATA
AACCTGACGTGGCCAGGCCGAGGTAGCACGAAGCAGTTCCTGAATTCCTTGGGTTTTAGT
ACCACACAATTCTGAGGATGTATCTTCTTTTGACCGCATTCTGAGGATGCAACTTCCTTT
TCCCAAGTTTCAGTGTATGTGTGAGTATGTTGAAGAGATTGGGTCTTCTTGTGTCAGGAC
AAAGTTGCGATGCTAATTTCTTCGAATGGATTGATCATCCATCAAAAAAAAAAAAAAAAA



Homology of Contig U35_3975 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g32340.110300.0protein|Spc97 / Spc98 family protein, putative, expressed
Brachypodium v1_2Bradi4g02710.110360.0
Arabidopsis v10AT1G80260.19955e-175| Symbols: emb1427 | Spc97 / Spc98 family of spindle pole body (SBP) component | chr1:30175924-30180511 FORWARD LENGTH=995