barSeed - Barley Seed Development Database

Probe CUST_6041_PI390587928

Source Contig U35_3976

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6041_PI390587928	Hv_44K_v2	TGTAAATGATGGCTTTGGTCATTTTGCTGGACCAGGTCATGGGGTTCTTACTGAAAGTCA	270	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61177.2	1152	2e-24	818 - 877	100	60 / 60	minus	ABC08612
Harvest21	ABC08613	532	3e-25	271 - 330	100	60 / 60	plus
Harvest35	U35_3976	533	3e-25	271 - 330	100	60 / 60	plus

Contig Sequence (533 bp)

>U35_3976 533 Hv_44K_v2
AGGAATCCATAAGATATTCAGCTGATAAAATGCTCCTAACCGCTCCAGATTCGTTGGTTG
TTTCATTAGCAAAGCATGACACACGATATGATGAGGAAAGTGCACCAACTTCCAGAAAAG
GTCGTGCACAGGGTTTTGGCATCGATGCGCTTGATGTACTTAACTTCACATATAAGGTGT
CTTGGCCTCTTGATCTAATTGCCAATACAGAGGCTCTGAAGAAGTATAATAAGGTAATTA
TTTTTACAGCAAGTATTTAACAGGGCTGCATGTAAATGATGGCTTTGGTCATTTTGCTGG
ACCAGGTCATGGGGTTCTTACTGAAAGTCAAGCGTGCAAAGTTTGTTTTGGACGAAACCC
GAAAGTGGATGTGGAAGGGCAGAGGCAGCACGACGCCTAATTTTAAACAACACTTAATAG
TAGGGCAGAAGCTCCTCCATTTTGTCGATGCATTTCATCAATATGTCATGGACCGAGTGT
ATCATAGTGCGTGGACTGAGCTTTGTGATGGCATGGCATCTGCTACTACATTA

Homology of Contig U35_3976 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g41290.1	1056	3e-83	protein\|Spc97 / Spc98 family protein, putative, expressed
Brachypodium v1_2	Bradi4g02710.2	1012	6e-89
Arabidopsis v10	AT1G80260.1	995	2e-56	\| Symbols: emb1427 \| Spc97 / Spc98 family of spindle pole body (SBP) component \| chr1:30175924-30180511 FORWARD LENGTH=995