barSeed - Barley Seed Development Database

Probe CUST_6039_PI390587928

Source Contig U35_3979

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6039_PI390587928	Hv_44K_v2	AAGCCTGAAATTGTTGTTGGAACTCCAGGAAGATTATGGGAGCTAATGTCATCAGGCAAT	1156	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366021	3098	2e-24	1130 - 1189	100	60 / 60	plus	ABC24338
MLOC	MLOC_43304.1	1723	2e-24	1076 - 1135	100	60 / 60	plus	None
JLOC1	JLOC1_27991.1	1726	8e-25	1071 - 1130	100	60 / 60	plus
Harvest21	ABC17137	810	3e-25	748 - 807	100	60 / 60	plus
Harvest35	U35_3979	1219	3e-25	1157 - 1216	100	60 / 60	plus

Contig Sequence (1219 bp)

>U35_3979 1219 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGAAAAAAAGAAGTGCATACCCAAACCCTCACCTCTTCCTT
CCCTTGTGCCGTCGCCGCCAGCGCCAGCGCCACCGCCTCCTCCTCCCGCCGCCCTCGGTT
TCCGATGGCCGACGCACCGGAGCAGTCATCGTCAGACCCGCCCACACCGCCGCAGGAGGC
CATCCAAAGGCCTAAGAAAAATAAGAAAGGTCGCAGGAAGAAACCGAAGAAAGCCGCCGC
CGCCGCCGCCGCCGCCGCCACTGCCGCCCCCTCCCCCTCTGGCGCCACCATGGTCGAGGA
CCCCTTCCTCGTCCTCGCCGGCGGCAAGGAAGGAGGGTTCCTGGAGCTGGAGGAGATCGA
CGGGGCCGATTTCGGGATCTTCGGGAGCGGCTTGGAGGACGTGGGAGCAACTGAGAAGAA
AGCGTGGAATGACCAGAAGAACAAGAAGAAGAAAAAGAAACGCAAGCGAGGGGATGCCAA
ACGCTTGGATGCTGATGTCGGCGGCGATGGTGACGGCGATTGTGCAGGTGGTTCGGTAGC
TGAGAGCGAGGAGGAGGGTGAGAATGGTGAGAAGAAGGGGAAGAGGAAGAAGAGGAACAA
AAAGAAGAGGAAGGTGAAGGATAACGATTCAGAGAGCAAGGAGGGCGTTGCCGATGACAA
TGTGGAAGATATGCAAGATGACATTGAAAATGTGGAAGAAGACAACAAAGATGAGGTGAA
ATTGGGTGAGGATGAACTTTATGCGTGGCTAGAGCTAAGATTGCACCCCCTTCTTATCAA
GGCAATGCACAGGCTTGGGTTCAATGAACCAACACCTATACAGAAGGCTTGCATTCCTGC
AGGGGCTCATCAAGGCAAGGATGTTATTGGAGCAGCTGAGACAGGTTCTGGCAAGACACT
TGCTTTTGGTCTCCCTATTTTGCAGCGCCTTCTTGAAGAACGAGAGAAGACCACCAGATT
ACATGTAGAAGATGAAAAAGAGGCGGAGGGAAGTTCTACAGGAGGTCCACTCAGAGCACT
TATTTTGACACCCACCAGAGAACTCGCCAAACAGGTCTGTGATCATCTAAAAGAAGCAGC
TAAGTTCTTAGGAATTCATGTTGTTCCTATTGTTGGTGGTTTATCCATGGAAAAGCAAGA
ACGACTTTTGAAAAAGAAGCCTGAAATTGTTGTTGGAACTCCAGGAAGATTATGGGAGCT
AATGTCATCAGGCAATCAG

Homology of Contig U35_3979 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g43140.1	833	8e-96	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi5g15377.1	832	2e-113
Arabidopsis v10	AT3G16840.1	826	3e-62	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr3:5738020-5743042 REVERSE LENGTH=826