barSeed - Barley Seed Development Database

Probe CUST_6038_PI390587928

Source Contig U35_3980

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6038_PI390587928	Hv_44K_v2	TCTTTTGATGAGAATAGTAATAAGAGCATCTCCGGCAGCTCCCTTCTCGGCAATAAAAAA	1744	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.034	2.894	1.071	0.539	0.798	0.693
Raw	48.165	68.057	23.370	15.882	8.647	9.141

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_3980	1815	3e-25	1745 - 1804	100	60 / 60	plus

Contig Sequence (1815 bp)

>U35_3980 1815 Hv_44K_v2
TGAGATTAACCACACTGGNGAAAGATAGTTTACCAGATAAATTAACATCAAATACTGAGA
AACCTTCTGGCGGTGGCCCTGCAGATAGTAAGACAGACACGACCTTATTCAGTAACAAAG
ATCAAGAACCAACAAGTAGGGAGAATTTTGGTGCAGCCACAGAGTTCTCAGATTCAACTG
TACCCACAGAAGCTGAAAAGAGAGGAAAATCTGTCATACAATTTCTAGAAGAATCTCTAC
CTACTAATAGTGAACCTATTACAGTTTCAGCGCATGCCATAAGTATGCAGGGAGGTGTTG
AAAGTGAGAAGTCAAAGCCTGACTTGCTTCTAAGTAACATTGATATAAGAGAGATGTCTA
ATAAGAAGCTATCTGCCGCTGCACCTCCATTCAATCCGTCTCCTCCAGCCATCCTTAGCC
CCCCACTTGCTGTAAGTGTCGGTCTCCCACCACCAGGTGCCGTTCCAGGTGTCGGCCCTT
GGCCTATGAATGTCTCCATGCATCCTGGACATTCAAATATGGTACCAAACGGTCCTCCTC
TGTGCACATCCCCACATCATTTGTACCCGCCCGCTCCTCGGTCTCCTAATCTATTGCATC
CTGTGCCATTTCTTTATCCACCATATAGTCAACCGCAGATGGTTCCAAGCAGCACATTTC
CCATGAACACCACTATTTTTCGCCCTAACCATTATGGATGGCAACCTTATATGAGCCCAG
CTGTGTCTGAGTTTGTGCCTGGACCAGCATGGTCAAACAATCATCCAGTTGCTTACACCC
CCAGCCCACATATTGCTGACACTATTTCTCAGTCTCTAGCAGATTCACACGTCCTATCTG
ATGCAGCTGTTGTTAGTATAGGACCTTCACTGGACAGCAATATGGCTGTAGTAAAGGAGG
AAATGGAGGTCCCTGTGGAGGTAGGCAGTGGTAATTTGATCCGCAATAACATTTTGGGAG
AGGAACATGATAAAGAGTTAAAGGATGCTGTTAATGCTGCACTTAATCCACACACGCCAG
GAGACAGCATATTTAATATTGGTGGAACGAAACTGGGAGGCATCATGAAGAATGAAGACG
AGGGTAGCTTTAGGATATTTGTAAAGGGGAAAAGCAGGCGAAAGCAAACTCTGAGGATCC
CGATAAGTTTGCTTAACAAGACATATAGCTCACGTTCCTTCAAGCTTGACTTCAACAGAG
TAGTCAGAGAGAATGATATCTTCAGGCCACCGGGCGTTTCTTTTGCTGAAGTAGTTTCTT
CTGGCGACTGAGGAATATTCCACCAGAGTCAAATATTGACCTATGACATTATTACTCAAA
GAGAATTATGATGGATCTCCATTTGAAAAATACTGAAACGTGACACTCTTATTTTTATCT
GAGCATTCGGAAGGCAGCAACAATGCTCCTTCAGTGTTCCAGATCTGAAATTAATCAATC
CAAGCTACTATGAAAAGATAAATGCGTTTTCTTTTCCCACTTCAAATAAGGTGTCGACAA
TTCCGTGTGGAGTGTAGAGAGTTTTGTGAGATCCGGAACCAATACAAGGTGGAAGTGCTA
GCAAAAAATAACATGGCAGACTGATTCTTTTCTCCAATTTTGATAGACAAAATAGAATAT
TTTCCTCCAAAGTTTGGACTAAATTTTGGTCGTATGGAAGATAGCTTCTAGAAATTTAGA
AATTTGTTTGCTCCTGCATCCTGTAATAATCTCTCGTATCTTTTGTGTGAGAAACTAATG
TTACTCTTTTGATGAGAATAGTAATAAGAGCATCTCCGGCAGCTCCCTTCTCGGCAATAA
AAAAAAAAAAAAAAA

Homology of Contig U35_3980 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g23990.1	1890	7e-136	protein\|tetratricopeptide repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g29090.1	1641	3e-167
Arabidopsis v10	None