barSeed - Barley Seed Development Database

Probe CUST_6036_PI390587928

Source Contig U35_3982

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6036_PI390587928	Hv_44K_v2	GAAGATGGTATGTGATGTGTTGTGCCCGCGATTATTTTAGTCCTACTGATGACCCGTAAA	1912	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.839	2.424	1.472	0.521	0.222	0.257
Raw	3415.293	7102.920	3644.550	2101.326	309.357	390.094

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365041	4933	2e-23	4860 - 4917	100	58 / 58	plus	ABC08600
MLOC	MLOC_76562.1	4342	2e-23	129 - 186	100	58 / 58	minus	ABC08600
JLOC1	JLOC1_51053.1	4490	1e-23	4160 - 4217	100	58 / 58	plus
Harvest21	ABC08600	1986	3e-25	1913 - 1972	100	60 / 60	plus	ABC08600
Harvest35	U35_3982	1986	3e-25	1913 - 1972	100	60 / 60	plus

Contig Sequence (1986 bp)

>U35_3982 1986 Hv_44K_v2
GGTGGCCGTGTCGGTGGCCTGGCAGGGGTCCGTGCTGGCCAGCGACTACTGGCTGGCCTA
CGAGACCGACGCCGGGAACGCCGCGTCGTTCCGGCCGACGCTCTTCATCGAGGTTTACGC
CATCATCGCCGCCGCGTCGGTGGTGCTGGTCTCGGGGCGGTCCTTCCTCGTGGCCTTCAT
CGGCCTCCAGACCGCCAACTCCTTCTTCAAGCAGATCCTCAACAGCATCCTCCACGCGCC
CATGTCATTCTTCGACACCACCCCGTCCGGCAGGATACTCAGCAGGGCGTCCTCCGACCA
GACCAACGTCGACCTCTTCCTGCCATTCTTCGTCTGGCTCAGCGTCTCCATGTACATCAC
CGTCATCAGCGTGCTGATTGTCACATGCCAGGTGGCCTGGCCGTCTGTCATCGCCATCAT
CCCTCTGCTCATACTCAACTTGTGGTACCGGGGCTACTACCTTGCGACGTCGAGGGAGCT
GACGCGGCTCGAGTCCATCACCAAGGCTCCGGTGATCCACCACTTCTCGGAGACGGTGCA
GGGTGTCATGACCATCAGGTGCTTCAGGAAGGGCGATGGCTTCTTCCAGGAGAACCTTAA
CCGGGTCAATTCTAGCTTGAGGATGGATTTCCACAACAATGGCGCCAACGAGTGGCTCGG
TTTCCGGCTAGAGCTGGCCGGCAGCTTTGTTCTTTGCTTCACTGCCTTGCTCATGGTCAC
TCTGCCCAAAAGCTTCATCCAGCCAGAATTTGTTGGTCTATCGCTCTCGTATGGTCTGTC
GCTCAACTCAGTCTTGTTCTGGGCCGTATGGATGAGTTGCTTCATCGAAAACAAGATGGT
GTCAGTCGAGAGGATAAAGCAATTCGTAAACATCCCGTGTGAGGCAGAATGGAGGATCAA
GGACTGTCTACCTGTTGCAAACTGGCCAACAAGAGGTGACATCGAAGTCATCGATCTCAA
GGTTAGGTATCGGCATAACACTCCACTAGTACTCAAGGGCATCACGCTTAGCATACACGG
AGGAGAGAAGATTGGAGTTGTTGGTAGGACTGGCAGTGGGAAATCAACACTGATCCAGGC
CTTGTTCAGAATAGTGGAGCCTTCCGAGGGGAAGATCATCATCGACGGCGTCGACATCTG
CACCTTAGGACTCCATGATCTGAGGTCTCGGTTCGGAATCATACCTCAGGAGCCCGTGCT
CTTTGAAGGTACCATCCGAAGCAACATCGACCCGCTCGAGGAGTACTCTGATGTTGAGAT
TTGGCAGGCCTTGGACCGTTGTCAGCTGAAGGAAGCCGTGACATTAAAACCGGAAAAGCT
TGATGCATCAGTTGTCGACAACGGCGAGAACTGGAGTGTGGGACAGCGGCAACTGCTTTG
CCTAGGCCGGGTGATGCTGAAACACAGTAAAATACTGTTCATGGACGAGGCCACCGCGTC
GGTGGATTCCCAAACCGATGCCGTGATTCAGAGGATCATCAGGGAAGATTTTGCAGAGTG
CACCATCATCAGCATTGCCCACAGGATACCGACGGTCATGGATTGCGACAGAGTCCTTGT
CATTGATGCAGGACTAGCAAAGGAGTTTGACCGGCCTGCCGCCCTGATCGAAAGACCGTC
GCTCTTTGGAGCACTGGTTCAAGAGTACGCGAACCGGTCGTCTGACATGTAACCAGTGAG
AGGGAATGGCCTATTTTCTGCTTCAAGATTTGGGAGGGATCGAGGGATGGAGATTTCTCC
ACGAGGTGGCATGAGTAACCTGCACTCGTACTCTGATATGTCACCGGCTGTGATTGATCT
TGAGAATGGTCAAAGGAGAAGCCAGTGTGCGATAGGCATATGATCCGTAGAGATTAGTTC
CGAGATTCATTCAACCCATTAAGCTGGAGTTTTTCTGTCACTGGTATGAGCTGAAGATGG
TATGTGATGTGTTGTGCCCGCGATTATTTTAGTCCTACTGATGACCCGTAAAAAAAAAAA
AAAAAA

Homology of Contig U35_3982 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g25386.1	1528	protein\|multidrug resistance-associated protein, putative, expressed
Brachypodium v1_2	Bradi2g12727.2	1527
Arabidopsis v10	AT3G62700.1	1539	\| Symbols: ATMRP10, MRP10, ABCC14 \| multidrug resistance-associated protein 10 \| chr3:23190428-23195727 REVERSE LENGTH=1539