barSeed - Barley Seed Development Database

Probe CUST_6035_PI390587928

Source Contig U35_3983

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6035_PI390587928	Hv_44K_v2	GTTCACTTGTTAATTTGTAGCAAGAGAACTGTGGTTTGAAGCAATGCTACAACAATTCAA	934	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.023	3.501	1.243	0.789	0.337	0.360
Raw	99.738	115.988	35.755	38.326	3.340	4.959

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357331	2423	2e-23	2359 - 2416	100	58 / 58	plus	ABC09696
MLOC	MLOC_34008.1	2878	2e-23	1461 - 1518	100	58 / 58	minus	ABC09684 ABC09696
JLOC1	JLOC1_21960.1	3149	1e-23	1461 - 1518	100	58 / 58	minus
Harvest21	ABC09697	767	3e-25	693 - 752	100	60 / 60	plus
Harvest35	U35_3983	1008	3e-25	935 - 994	100	60 / 60	plus

Contig Sequence (1008 bp)

>U35_3983 1008 Hv_44K_v2
GAGAGAGAGAGCACCGAGGTGGACGTGGTGGCCGTGTCCCTCGGCGACGACAACGACGAC
GACGGCAGCATCTCTCAGGTCTCCATCAAGAAGCTCACCGTCGGAGGCGAGAACAACGCG
TTCCCGTCGCCATCGCCGGACGGGAAATGGCTGGTGTTCCGGTCGGGGAGGTCCGGGCAC
AAGAACCTCTACATCATGGACGCGGAGGAAGGCGAGGCCGGCGGCATCCGGCGCCTGACG
GACGGCCCATGGACCGACACCATGTGCAACTGGTCGCCCGACGGCGAGTGGATCGCCTTC
GCCTCCGACCGGCACAACCCGGGAGGCGGCAGCTTCGCCATCTACATGGTGCACCCGAAC
AGCACCGGGCTGCGTAGGGTGGTGCACAGCGCGGACGGCGGCAGGACAAACCACCCTTGG
TTCAGCCCGGACTCCAAGCGCATGGTGTTCACCTCGGACCTCGCCGCCGTTTCCGCCGAG
CCCATTTCGAACCCGCACCACTACCAGCCCTACGGGGAGATATTCACCATCAACATCGAC
GGCTCGGGGCTCCAGCGGCTCACGCACAACTCGTTCGAGGACGGCACGCCGTCGTGGACG
CCGCACTTCCTCGAGCCCCGGGACGTCGGCGAGACGCTGCAAGCCTCAGGGAGCTGCGCG
TTCCAGGACTGCCACTGGCTCAGCATTGAGGATGATGCCCAGCCTGCAAGTGTTGGCCTT
CGCTATGCTCATGGTAACAACAAGATCGGTTGCTAGAAGCTGTGTCCTGATGATACCAAG
GAGAGCATGCCTGCTGTATAGTATAAATGTTTGCCATGGCTGCATTTTGCTTGATTAGTA
CTGTATCTGTATTTGCTCAGGAATAAGGCCATGTAAAGTGAGGCAAATATGAACCAAATT
GCCATTGGGATATGTATGTACTATATGAAGCTATGTTCACTTGTTAATTTGTAGCAAGAG
AACTGTGGTTTGAAGCAATGCTACAACAATTCAAAAAAAAAAAAAAAA

Homology of Contig U35_3983 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g62370.1	689	1e-144	protein\|WD40-like Beta Propeller Repeat family protein, expressed
Brachypodium v1_2	Bradi1g02270.1	710	2e-156
Arabidopsis v10	AT1G21680.1	706	8e-107	DPP6 N-terminal domain-like protein \| chr1:7613028-7615148 FORWARD LENGTH=706