barSeed - Barley Seed Development Database

Probe CUST_6032_PI390587928

Source Contig U35_3986

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6032_PI390587928	Hv_44K_v2	TCAGTCACCACACATGCCTAAATCTGAAGAAGCTTAATGGAACGTACCGTCGCCAAAAAA	1538	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.328	1.327	1.086	0.876	0.424	0.417
Raw	2453.970	3730.937	2758.053	3448.503	594.266	637.019

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73738.3	2871	9e-22	2734 - 2788	100	55 / 55	plus	ABC09748
MLOC	MLOC_73738.4	2850	9e-22	2713 - 2767	100	55 / 55	plus	ABC09748
MLOC	MLOC_73738.5	2853	9e-22	2716 - 2770	100	55 / 55	plus	ABC09748
MLOC	MLOC_73738.6	2874	9e-22	2737 - 2791	100	55 / 55	plus	ABC09748
MLOC	AK363338	3187	3e-21	3134 - 3187	100	54 / 54	plus	ABC09748
JLOC1	JLOC1_49102.4	2892	5e-22	2735 - 2789	100	55 / 55	plus
JLOC1	JLOC1_49102.3	2889	5e-22	2732 - 2786	100	55 / 55	plus
JLOC1	JLOC1_49102.2	2876	5e-22	2719 - 2773	100	55 / 55	plus
JLOC1	JLOC1_49102.1	2873	5e-22	2716 - 2770	100	55 / 55	plus
Harvest21	ABC09748	1608	2e-22	1539 - 1593	100	55 / 55	plus	ABC09748
Harvest35	U35_3986	1609	3e-25	1539 - 1598	100	60 / 60	plus

Contig Sequence (1609 bp)

>U35_3986 1609 Hv_44K_v2
CACAAATGACACTCGATTCTTCCCAGTCTACTTCAAGCAACAGGGCATCAAGTGGTTCAT
TAGGTGAGAGGCACAGCAATGGTCTTGGTCTGAAGCTTAATTTAAGAAAGGAACGTGGTA
AAGCCAACCCAATTAGAGGCTCAAGTGGATGGGTTTCTATAACAGCACGTAATTCTGACG
GAACGTCCAGAGAAATGGCAAAACGACGACGTCTGTCTGAAAATGGCAACAGTGATTTGA
GAACTGGCAGTGGTAGTGATCCTTTTGCATTTGATGATGTTGATCAGGAGCCTGAGCCTG
AGCCTGAACTATTTGGTCAAAAAAAGCGATCAACGCATGGGCATCAAGCAAAATCAGCGA
ATGAGAAATTGTCGGACGATCGTGGGATTGGAAGTCAGGAATCATATCAACCTGAAGATA
ATCATCATCTGGGTGCAACATCCCATTCTATTGTTGACGATGATTCCAATCTTTTGGAAG
ACTGCCTTTTGGCATCAATTAAGGTTCTTATGAACTTGGCAAATGACAACCCATATGGTT
GTGAACATATTGCATCATGTGGTGGACTTAACACCATGGCCTCCTTGATCATCAAGCATT
TCCCTTCATTTGATTTCTCCGTGGACACTGACCGAGATGTCGAGCTTGGACAAGATCTCA
CCTCTTCTGAGGACAGCAAAGCATGCCAAGTGAAAGCTAAGAAACTGCGAGACCATGAGC
TTGATTTTCTGGTTGCCATATTGGGTTTGCTTGTCAATCTCGTGGAAAAAGATAGCCTTA
ATAGGGTACGGCTTGCATCTGCCCGTGTTTCTGTGGATCTGTCTAAGAATCCGCAGAGTG
AAAAGGCACAGAGGGATGTTATACCACTCCTCTGTTCAATCTTCTTAGCAAGTAAAGGTT
CTGGGGAAGCTTCTGCAACTATATCACCGGATGATGAAGAGTCAATGTTGCAAGGAGCAC
GGGAAGCTGAAATGATGATTGTGGAGGCCTATGCAGCCCTCCTGCTTGGCTTTCTTTCGA
TAGAAAGCATGAAGGTTCGAGGAGCGATTTCCAGCTGCCTTCCAAATAACAACTTAAAAG
TTCTCGTGCCTGTGCTAGAGAAATTTGTGGCGTTTCATCTGCAGCTTAATATGATGACAG
ACGAAACACACTCATCTGTTACAGAAGTCATCGAAAAATGCAAACTGTGATAGAATGGTG
ACGAGGTCTCTTTGTATAGACTGACTGGCCTCTTCGCTGCCGAGGCACACACAAGTGTCC
CTCCTCGTCTTCTTGTGCGTCGCAGATGACCTGCAGTCATCTTGGGAACTAACCGACCGT
GGTGTCATTCTTTTTTCTTTTTCTTTTGCCCCCTGTTGTCGCGCATCTTTTGTGCGTGCT
CCTTCTCACCTCTCAAAAACACGCTGTTTACTTAGCCAATTCAATTGACTGTAAGATAAC
ATCATAGGGAATGTAGTGTGTTGTGCATCTGTGCTGTTTCGGTTATTATAGTTTGTTCGG
TTATTATAGTTTGTATTTTGTACTGGTACCAGTCACAGTCAGTCACCACACATGCCTAAA
TCTGAAGAAGCTTAATGGAACGTACCGTCGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3986 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g35380.1	888	7e-174	protein\|expressed protein
Brachypodium v1_2	Bradi3g29910.1	895	0.0
Arabidopsis v10	AT1G61030.1	840	2e-72	WAPL (Wings apart-like protein regulation of heterochromatin) protein \| chr1:22477969-22482080 FORWARD LENGTH=840