barSeed - Barley Seed Development Database

Probe CUST_6028_PI390587928

Source Contig U35_3990

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6028_PI390587928	Hv_44K_v2	CATGGGTACGTAGCCGGTTGCTTGTAAACTCCATTGAATAAATTAAGGGAAGAGAAAAAA	603	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45376.1	1588	2e-24	99 - 158	100	60 / 60	minus	ABC09782
JLOC1	JLOC1_29458.1	1585	8e-25	96 - 155	100	60 / 60	minus
Harvest21	ABC09783	727	3e-25	655 - 714	100	60 / 60	plus
Harvest21	ABC09782	866	3e-25	794 - 853	100	60 / 60	plus	ABC09782
Harvest35	U35_3990	674	3e-25	604 - 663	100	60 / 60	plus
Harvest35	U35_3989	866	3e-25	794 - 853	100	60 / 60	plus

Contig Sequence (674 bp)

>U35_3990 674 Hv_44K_v2
GGGACGACCAAGATCCTCCCGGCGCTGGACGCGCACGAGTCGCAGTACTATGTGAGCCTC
GTGGGCATCAGCCTGGACGCCAAGAGGCTGACGGGGGTCAGGCCGGAGATGTTCGCCCGA
CGGCGCGGCGGGGAGGGCGGGTGCGTGGTCGACCCCGGCACGCCGCTGACGGTGCTGGTC
CGGGAGGCGTACCGCGTCGTGGAGGACGCCGTCTGGAGTGACCTACGACGGAACAAGGCC
GAGCGCGTGCAGCGCGAAGGCTACGGGCTGTGCGTGCGCAAAACCGCAGAGATCAAGCGG
CATCTGCAGTCGCTGTCCTTGCACTTCGCGGAGGAGACGGCGAGGCTGGTCGTGAAGCCG
GAGCAGCTGTTCGTGGCGGTGGAGAGCAGGCTCCATGGGGCCGCCCTGTGCCTTGCCATG
CGTCCGGGCGAGCGGACGGTCATCGGCGCGCTGCAGCAGGTGGACACGAGGTTCGTGTAC
GACCTCAAAGACGCCAAACTGTCCTTTGCGTCCGAGCCGTGCTCTCAGGACACCGCCGGT
GTGGATTGAACTTGATGAACCAACCGGCAGCAGTGCTAATTCCTATGTTTGGACATTCGT
CGACATGGGTACGTAGCCGGTTGCTTGTAAACTCCATTGAATAAATTAAGGGAAGAGAAA
AAAAAAAAAAAAAA

Homology of Contig U35_3990 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None