barSeed - Barley Seed Development Database

Probe CUST_6017_PI390587928

Source Contig U35_18702

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6017_PI390587928	Hv_44K_v2	ATGGATTGGGAATGTGAACTTGTGGATAAGAAACAAAGAATTTGTTCGGGGCTCAAAAAA	955	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.712	0.549	1.490	1.872	1.185	1.165
Raw	1060.204	1208.375	3017.427	5614.327	1341.638	1408.004

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17888.1	645	9e-22	583 - 637	100	55 / 55	plus	ABC09457
MLOC	MLOC_17888.2	1294	9e-22	1232 - 1286	100	55 / 55	plus	ABC09457
JLOC1	JLOC1_12361.3	971	5e-22	903 - 957	100	55 / 55	plus
JLOC1	JLOC1_12361.2	656	5e-22	588 - 642	100	55 / 55	plus
JLOC1	JLOC1_12361.1	1306	5e-22	1238 - 1292	100	55 / 55	plus
Harvest21	ABC09457	1014	3e-25	944 - 1003	100	60 / 60	plus	ABC09457
Harvest35	U35_18702	1026	3e-25	956 - 1015	100	60 / 60	plus

Contig Sequence (1026 bp)

>U35_18702 1026 Hv_44K_v2
ACTACCATCCTACTCACCATCACGCACCATTCCCTCTTCTCCCCTCCGCGCCACCGGCGT
GCGTGCGTGCGTGCGTCGTCAGTTCGCTCCAGCTCAGTTGAGTTCAACATCCGGCTTCTC
GGTTCGGTCTCCCTCCCGCGATGGACACGTCGGCGTCCCCTGGTCCCAGCTCGTCCGCGC
CGGAGCCCCGGCAATGGCCCGGCGGTCGCCCAGGGCTGGGGTCCGTGGCGCTTGAGCTGG
CCTGCAAGGTGCTCTGCGTCGTGGCGACCTGCGCCTTCGCGGCCGTGGGGTCGCTGGTCG
GTGCGGTGTCGGGGTCGGTGATCGGGCTGGCGACGGAGAGCGGGGTGGTGCGCGGCGCCG
GCATCGGCGCCATCTCCGGCGCCGTCTTCTCCATCGAGGTCGCTGAGTCGTCGCGGGACC
TCTGGCACACCAGCGACTCCGCCGTCTGGAGCGTCCTCTTCATGGTGGACATCGTCCTCA
GCCTGCTGAGCGGGAGGCTGGTCCGCGAGAAGGTGGGGCCGGCGGTGCAGAGCGCCGTGC
AGAGTCAGATAAGCGCCATCAGCGCGCCGTTCACGGAGCCCAGTGACCTGTTCGAGACCG
GCGGCGCGAGGGGGCTGCCAGCGCACGCGCTCCGGCGGCTGCCGGCGATCAAGGTCGGCG
CGGACACGGCGGTGGACGAGGCCGGGGAGGCGCTCTGCTGCTCGGTGTGCCTGCAGGACC
TGGAGGTGGGCGAGTCCGCGAGGCGACTGCCCGGCTGCCGGCACGTCTTCCACGCGCCCT
GCATCGACCGCTGGCTCGTCAGGCACGCCTCCTGCCCGCTCTGCCGGCGAGACATCTGAG
CCCGGCAGGGCACCGTGGGTCCATCTTGTAATTAAAATCGCCATTGTTCACCGTGCGTCA
GGTGCCCGTAAGGGGACCGGCGGCAAAAGAAGCCACTTTGTGTAGCGATGCGTGAATGGA
TTGGGAATGTGAACTTGTGGATAAGAAACAAAGAATTTGTTCGGGGCTCAAAAAAAAAAA
AAAAAA

Homology of Contig U35_18702 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g39770.1	234	1e-96	protein\|zinc finger, C3HC4 type, domain containing protein, expressed
Brachypodium v1_2	Bradi3g32470.2	231	7e-86
Arabidopsis v10	AT4G35840.1	236	7e-55	RING/U-box superfamily protein \| chr4:16981083-16982266 FORWARD LENGTH=236