barSeed - Barley Seed Development Database

Probe CUST_6009_PI390587928

Source Contig U35_18710

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6009_PI390587928	Hv_44K_v2	TTGATGTGACGAGGCTTGAATTCATCACTTTGCCATCTCTTACTTGCTGTGATTAAAAAA	1237	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.250	1.184	1.060	0.883	0.423	0.452
Raw	67.130	101.569	78.896	109.530	17.039	19.884

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_18710	1308	3e-25	1238 - 1297	100	60 / 60	plus

Contig Sequence (1308 bp)

>U35_18710 1308 Hv_44K_v2
CCAGGCATGATTCTGATTCTGATTCTGACTCAGATTCGGATGGATGGCCAAGACGCCTTG
ACACAAAGGTAAAAAAGATCGTGGAAGAGAAAAAAAGGGGGATTAGCTCAAGTGAGAGTT
CATTTTACAGCAGCAGCAGCAGCAGTGAATCAGATGTGAGCAATGATAGCCGTGAGAACA
GGAAATCTGACAGAGGATTAAAGAGTGGTAATGATCAGAAGTATGCTAAAAGGGCTTCTT
ACAAGAATGAGTTAGAGGAAAGGAAAAAGGGTCAAGATGGGAGAAGAAAGGATCTGGAGT
ATCAAAAGCATAAGGAGGAAGAGAGAATCGAGCAGGAGAAACAGAAACAGAGGGAGGAAG
AGAGGAAAGAGTTGGAGAAGCAAAAACGTCTGGAGGAAGAGAGGAAGGAGCTGGAGAAGC
ACAAGCAGAGGGCAAAGGAGGAAGAGACACTGAAAGAGAGGGAACATGAGCGGAGGAAAG
GTGAGCGTGGTGTGGAAAGGGACAGCAGAAGAAAGGTTGGAGAAGATAGGTATGACCCAA
ACGCAAACAGACTCAGCGATGATGAAAACAGGGACCGAAAGACGCATGAAGATTATGGTC
GACACAAAACTAGAGATTCAGATAGGTATGACCCAAATGCAAACAGACTTAGCGATGATG
AAAACAGGGACCGGAAGACGCACGAAGAGTATGGTCGACACAGAGCTAGATACTCAGATA
GCCATGATTCAAAGAGGTCTAGATATGATGACTCTTATAACCACTCAAGGAGGGATTATG
AAGAGCGCTATTCTAGAGATGAGCACAGAGACAGGAGGCGTCGTTGAATGCTGAAGTTAT
CTTAAATTGCATCTCATTTCCATGAAGCAAAGTGCAGCGCTGGTATAGCTTGTTGAGCAA
GGACAGTAACATCGGGCTACATTGAAGAAGGTTCATTCGCCTAGCACCAGATTTTGGCCA
TGTTAGTTACTGCTAGCTGTCATCCAGCAATGCTGTATTGTCGCAGCGGTGAAGTTTTGT
TTGCTCATGTTTGTATGGACTTTGTCCTTTCTCTGCGGTGCCAGTCTTGAGTGTGTAAAA
TGTGGAGCTTATACTATTATGCCAGTGGCATCATGTTGCCTCAGCCACAATGTGGGGAGA
TGTATCTAACTTCTTATGCCTTTTGTTGTTCGAGATGAACCTTGCTAAAACTTTGTCTAA
GGCTTTTAGCTTGCCTTGATGCTCATTTTACCACTGCTTGATGTGACGAGGCTTGAATTC
ATCACTTTGCCATCTCTTACTTGCTGTGATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18710 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None