barSeed - Barley Seed Development Database

Probe CUST_5998_PI390587928

Source Contig U35_18721

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5998_PI390587928	Hv_44K_v2	CTTGTTACGCTAGTCATTGTCTCTTAAGGTATCTGGCGACGTATGGATCTGTGCAAAAAA	1511	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.071	1.828	1.486	0.668	0.161	0.142
Raw	2252.443	3187.505	2208.390	1598.280	135.947	129.026

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_4302.2	2824	6e-21	2673 - 2728	98	55 / 56	plus
JLOC1	JLOC1_4302.1	2772	6e-21	2621 - 2676	98	55 / 56	plus
Harvest35	U35_18721	1582	3e-25	1512 - 1571	100	60 / 60	plus

Contig Sequence (1582 bp)

>U35_18721 1582 Hv_44K_v2
GATACAAGAAAAGGCTAAAAAGGTAGAATATACGCGAGTACGTAATCTTGTTGACAATGC
CTACAGGAAAGACCCTAGGATCCAGAGGAGAAAGGAGGAGGAGAAGGCTGAGAAACAGAG
GAGAAAGGAGGCAAAATACATGGCCAAGAAACTGCAGGAGGAGGAAGCTGCAAGGGCTGC
AGAAGAAGAAAGGAAGAGGAAAGAAGAGGAGGCGAAGGTAGCTGCAGCAGCTGCTCTCAA
TCAAAAGAAGTTGAAGGAAAAGGAGAAGAAGTTGCTACGCAAAGAGAAATCTCGTCTGCG
CACACTTGTGGCACCAGTAGTTGCAGAGCCCAGCTTCAGTCTGTCAGCGGATGATGTTGA
AACAGTATGCACATCACATGATGTTGAACATTTGAAGAAACTCTGTGATATTATGGAGGA
CAAGGATACAGCTGAAAAGGCCAGGTTGCTGAGGGGTGCACTGAACAAAGAAGAAAACTC
CTCGAATACCTCAAAAGAAGAGAAAATTCATGCCAATGGTGTGGCGGGTTCTACTCCAAA
ATCCACAGCCCCACAAGGCCCTCCAAAATCCACAGCCCCACAAGTCATTACACTAGGCAA
CTATGAGAAAAAAGAGAAACCATGGGGAAAGGAAGAGATTGAATTGCTTAGGAAAGCAAT
ACAGAAGTATCCGAAGGGAACTTCCAGGAGGTGGGAGGTTGTTTCAGAGTTTATTGGTAC
CGGTAGATCTGTTGAAGAGATTCTGAAGGCCACGAAAACCGTTCTTCTGCAGAAGCCAGA
CTCTACTAAAGCTTTTGACTCATTCCTTGAGAAACGTAAAGCAGCTCCATCTATTGTATC
GCCTCTTTCCACAAGAGATGGTACTGAACCATCCAAGCCGGCTGGTGGCTCAACCTTGGG
AGCTGGCAGTGAGCCATCCAAGGCAGCTGAACAACCTGCTGCCAGCAGCAGTCAGACAGC
CAATGAGAAAACTGGTGCTGATCCTGTCCCCGAAGAGGCACCTTCTGCAACAGATCCAGA
TGCCTGGTCAGAGGCTCAGGTGCTGGCCCTTGTTCAAGCTTTGAAGGCATTTCCCAAGGA
TGCAAACCAAAGATGGGAGCGAGTAGCTACTGCTGTCCCTGGTAAAACAGTGGTGCAGTG
CAAGAAAAAGGTTTCGTCAATGAGGTCGAACTTCCGGACCAAGAAGGCGGAGTAGAACAG
ACCACCACTGAGGCCACACAAGAAGATTGGTCGATTGCCTTTTGAAGACCCCAGGGCTTG
CTTCCTTGCTGCTGACTTTCTGGGTTGTTTCGTCAAGACTCAGCTGGTTTGTTACGAGGA
GCAAGTCCTGAAGTCGCTGATGATCGAGGCACCTATTGAGAGAGAGAGAGAGAAAGATAG
AAGCTTAGATCAAAATTTTGAGTTATGGAAAATTACCTACCTTATGATTTATCACAATGA
TGTTCCCCCTGCATACAGTAATACTTCTACCTGATGCCTGCTATTGGTTACGAATTTATG
CTGACGTTATTCTTGTTACGCTAGTCATTGTCTCTTAAGGTATCTGGCGACGTATGGATC
TGTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18721 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g30890.1	267	1e-96	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi5g07300.1	664	2e-135
Arabidopsis v10	AT3G11450.1	647	3e-68	DnaJ domain ;Myb-like DNA-binding domain \| chr3:3605459-3607402 REVERSE LENGTH=647