barSeed - Barley Seed Development Database

Probe CUST_5997_PI390587928

Source Contig U35_18722

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5997_PI390587928	Hv_44K_v2	GACTTCACAGTTGAGTGTATCCTGAGGAATCTTCCGTCTCAGGCTTGTCCGTTCAAAAAA	1688	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.289	1.452	1.131	0.863	0.350	0.444
Raw	7722.380	13560.983	9243.470	11248.007	1586.960	2193.243

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60821.9	1793	9e-22	1729 - 1783	100	55 / 55	plus	None
MLOC	MLOC_60821.1	4793	9e-22	3017 - 3071	100	55 / 55	minus	ABC13002
JLOC1	JLOC1_39698.1	1860	5e-22	1735 - 1789	100	55 / 55	plus
Harvest35	U35_18722	1760	3e-25	1689 - 1748	100	60 / 60	plus

Contig Sequence (1760 bp)

>U35_18722 1760 Hv_44K_v2
GGCGACTGCTAAACCCTAGCTCGTTCCCCTTCTCGTCCTAAACCTTTCGCCCCCATCTCC
GGGCAACATCTAAGCAGCGGCGGCGGCGGCGGCGGGAGGTGATCATGGCGGAGCTGAAGC
GGCTGTCGGAGAGCCGCGACCTAACCCGCATCGAGCGCATAGGCGCGCACTCCCACATCC
GTGGGCTGGGGCTGGACTCCTCCATCGAGGCCCGCGATGCCTCGGAGGGGATGGTCGGCC
AGCTCCCCGCGCGCCGTGCCGCTGGACTCATCCTCCAGCTCATCCGCCAGGGGAAGATCG
CCGGCCGCGCCGTCCTCCTCGCCGGGCAGCCAGGGACCGGCAAGACCGCCCTCGCCATGG
GCATCGCCAAGTCGCTCGGCGCTGAGACGCCATTCGCCTCCGTCGCTGCCTCCGAGCTCT
TCTCCCTCGACCTCTCCAAGACCGAGGCTCTCACCCAGGCGTTCCGCCGCGCCATTGGCG
TTCGCATCAAGGAGGAAGCGGAGATCATTGAGGGCGAGGTCGTTGAGATCTCAATCGACC
GCCCTGTCTCCGCCAGTAGCAGCTCGGGCATACCTTCAGGTGCTGCCGCGGCCGGGAAGA
CTGGGAGGCTCACGCTGAAGACCACGGACATGGAGACGGTGTATGAGCTGGGTGGGAAGA
TGATTGAGGCCCTGGGGAAGGAGAAGGTACAGAGCGGGGATGTGATTGCGCTCGACAAGG
CCTCTGGGAAGGTTACTAAGCTTGGCCGCTCCATCGGGAGGTCACGGGATTATGATGCCG
TTGGTTCGCACACCAAGTTTGTCAAGTGCCCCGAAGGAGAGCTCCAGAAGCGCAAGGAGG
TTATGCACTGCGTTACCTTACATGAGATTGATGTCATCAATAGCAGGACACAAGGCTTCC
TTGCACTCTTCACTGGTGACACTGGTGAGATTCGTGCAGAGGTTAGGGAGCAGATTGACA
CAAAAGTTGCCGAGTGGAGAGAGGAAGGGAAGGCTGAGATTGTTCCTGGTGTTCTGTTTA
TCGATGAAGTCCACATGCTAGACATCGAGTGTTTCTCCTTCCTGAACCGTGCTTTGGAGA
ATGACATGGCTCCGATCCTCGTTATTGCGACGAATCGAGGCATTACAACCATACGCGGGA
CCAATTACCGGTCACCACATGGTATACCGACCGATTTCCTCGACCGCCTCTTGATCATCA
CGACACAGCCATACTCGGCGGAGGAGATCCGGAAGATCTTAGACATCAGGTGCGAGGAAG
AAGACGTTGAAATGTCTGCCGAGGGCAAGGATCTGCTCACGAAGATTGGTACCGAGACCT
CGCTCAGGTACGCGATCCAGCTTATCACTTCTGCCGGCCTGGCCTGCCAGAAGCGCAAGG
GCAAGGTGGTGGAGATGGAGGACATAAGCCGGGTGTACCACCTGTTTCTGGACGTGAAGA
GATCGACACAGTTCTTGATCGACAGCCAGAGTGACTACATGTTCAGTGAAGTGCAAGGGG
ATTCAGATGGGGATGACGCCATGCAGCCCTAGACGGGAATTTTTGCAATGTAACTGTGGG
TTGGTTTGTATGGCTCGTGTATCTTGTGGATTCTGCTTGCTCGTTTAGATTAGTGTTAAG
CGTGAGATGATTTTACCTGAAGGCACGGTTGATGGGTGCTGTGAGCTATGTTAACGGCTG
TAACCGGTGACTTCACAGTTGAGTGTATCCTGAGGAATCTTCCGTCTCAGGCTTGTCCGT
TCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_18722 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g08770.1	477	protein\|ruvB-like 2, putative, expressed
Brachypodium v1_2	Bradi1g23490.1	477
Arabidopsis v10	AT5G67630.1	469	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr5:26967535-26969306 REVERSE LENGTH=469