barSeed - Barley Seed Development Database

Probe CUST_5995_PI390587928

Source Contig U35_18724

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5995_PI390587928	Hv_44K_v2	CTGCATCACATATGATGAATCGGCTGGTACTATGCAATGAAGTCAAATTTTTGCTTGCAA	950	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.209	1.340	1.240	0.889	0.320	0.424
Raw	4440.650	7790.383	6195.477	7127.873	884.693	1278.274

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368141	2075	2e-23	2018 - 2075	100	58 / 58	plus	ABC11584
MLOC	MLOC_23172.1	206	6e-24	116 - 174	100	59 / 59	plus	ABC11584
JLOC1	JLOC1_16021.1	197	3e-24	116 - 174	100	59 / 59	plus
Harvest35	U35_18724	1025	3e-25	951 - 1010	100	60 / 60	plus

Contig Sequence (1025 bp)

>U35_18724 1025 Hv_44K_v2
TTCAAGAAAGAATCTGAGGCGTTCCGGGTGGAAATGGAGGGGGAGTTGAAGGCGAGGGTG
GAGGAACTGAAGGTGCTGGGATCCAAGAAGGAGGAGATGGATGCAAGGCTGGCGTCTTTG
GAAACAGAGCTCGCATTGTCTGTGACTAGGACACGGGGATTAGAGGCTGAAGTGATGGCA
AAGAAGAGGGAGCTTGATTTGTTGAAGGGCAGAAGTGATGAGCTCCAATCAGAGGTTGCT
GAAGCAGAGAAGAAGCACAGCATGTCTGCAGCAGAGGTTGACAGGCTCAGGATGGAATTG
GGTGTGTTGGTGAAGGCAAAGGAGGTTGCTTCCAAGGCATTCGATGCTGAGAAGACTGAA
ATCGTGAAGGAATTGGAGGCCCTCAAGAGGAAGGTGGAGGAAATCCAGGCTGACAAGGAG
GCAGCTGAGGGGGTGACACGTGAGAAGGATGCTCAGACCGTTAAGCTGAGGGCTGAGTTG
GAGGAGCTCCATGTTTCCATGTCACAGCTACAAACATCATGTGATGAACTTGATACCAAG
CATTCACGCCTGCAGAGCGAGAAGAATTCAGTTCAGAAAGCACTGGATGCTGAGAAGGCT
GAAGCAGGGAAGCTGATGTCGAAAATCAAGGCACTGGAGAACTGCAATGGTAAAATGGAC
AGTGAGATTGGAGAGTTGAGGATGGCATTGAAGGAAAAGAATGGAAAGATTGAAGACCTT
ACCAAGGAGGCTGAGGTGCTGCAGCTCGCAGTGGCTGAAGCGCAGAAGAAGAACAAGGGT
GGTATCTGGGCGTGGGTGTATGCCGCCACCACCACCGTGGTGGCCGCGATCTCCCTTATC
TATGCTACCAGGGGCCAGTGAAGGAGTGCACTTTTCTTTTTTCCTTTTTCTATGTTGATC
CTCTGTTTGCATGCTAGTATGCCACTCGGAATGGTCAGGTTGTTATCTAGCTGCATCACA
TATGATGAATCGGCTGGTACTATGCAATGAAGTCAAATTTTTGCTTGCAAAAAAAAAAAA
AAAAA

Homology of Contig U35_18724 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g34500.1	512	2e-95	protein\|expressed protein
Brachypodium v1_2	Bradi4g06017.1	514	2e-128
Arabidopsis v10	None