barSeed - Barley Seed Development Database

Probe CUST_5992_PI390587928

Source Contig U35_18727

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5992_PI390587928	Hv_44K_v2	CTGGGGAATGGGTCTGTTGTAAATTATCATTCAGTTCAAACTATGTTTGAGCAAGTTAAA	1817	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.972	2.415	1.158	0.668	0.331	0.304
Raw	347.399	440.640	180.075	162.304	28.827	28.525

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65693.1	2401	2e-23	97 - 154	100	58 / 58	minus	ABC11572
MLOC	MLOC_65693.2	1731	2e-23	97 - 154	100	58 / 58	minus	ABC11572
JLOC1	JLOC1_43239.1	1838	1e-23	1601 - 1658	100	58 / 58	plus
Harvest35	U35_18727	1885	3e-25	1818 - 1877	100	60 / 60	plus

Contig Sequence (1885 bp)

>U35_18727 1885 Hv_44K_v2
CTCCGCCAAGCTGCCGTTCCAAGCGTCGCCGGCGCACGCGGTGGTAACACGGGGGGAGGC
ATCCGGCCCGCAGGGCGGCGCGGCGCGGCGCGGCTTGTTGACCGGGGAGTTGACGCGCGC
TAGCTCGGCCGGCGATGGACCGGCGTCTCGCCGCGGCGGTGGCCGTGGCGGCGGCGATTC
TGTGGCTGGTCGTCGCGTCGGCGTCGGCCTCGTTGGCGGGGGCGGCGGCGGAGGAGCACG
GGCAGAGGGGGGTGGCCGTGCGGCAGGGGCAGGGGCGCCACCGGCACGCGTACGCGGCGA
TGATGTACATGGGGACGCCGCGGGACTACGAGTTCTACGTGGCGGTGCGCGTGATGATGC
GCTCCCTCTCCAGGGTCGGCGCCGACGCCGACCGCGTCCTCATCGCCTCCTCCGATGTGC
CCCGCGACTGGGTCCGCGCAATGAGGGAGGAGGATGGCATGAGGGTGGTGGTTGTCGAGA
ACCTGAAGAATCCTTACGAGGGCAACCTTGGAGGAATGAACAGGAGGTTTAAGCTGACAC
TGAACAAGCTCTACGCATGGAGCTTGGTTGAATACGAGCGTGTCGTCATGATCGACTCCG
ACAACATCTTCCTCCAGAACACCGATGAGCTCTTCCAGTGTGGCCAGTTCTGTGCTGTTT
TCATCAATCCATGCTACTTCCACACAGGCCTTTTCGTGCTCCAGCCTTCTAGGGATGTGT
TTAATGGCATGCTTCATGACCTGGAGATTGGTCGTGACAACTCTGACGGTGCAGACCAAG
GCTTTCTAGTCGGCTGCTTCCCGGACTTGCTGGACAAACCATTGTTCCATCCTCCTGAAA
ATGGCACCAAACTCAACGGAACATATCGCCTTCCTCTCGGCTATCAGATGGACGCATCAT
ACTACTATCTTAAACTGCATTGGCATGTTCCATGTGGGCCTAACAGCGTGATCACATTCC
CCAGTGCCCCTTGGTTTAAACCCTGGTACTGGTGGTCCTGGCCAATCTTGCCACTGGGCC
TTTCCTGGCACAAGCAACGCTGGGATGACCTTGGTTATGCTGCTGAAATTCCGGTGGTCC
TCATGGAGCTGCTAATGTACATAGGGATCATAGCGCTCACCAGACTGGCAAGGCCACAGA
TGACAAAACTGTGCTATAATCGGCGACCTGAGAAACAAGGTGCCCTGGTGCAGTGGCTAA
TCAAGCTGGCCGGGTTTGTGGCCATGATGGCTGCTTATACGATCCCGTTCTTCGTAATCC
CATGCACAATTCATCCAATCATGGGTTGGTCCATGTACCTGTTTGGTGTCCTCGCCTTCT
CAATGGTCGTGATCAATGCATTCCTGCTCCCACCGCTTGCCGTGCTCACAGCATGGCTTG
GGATTGTTGGAATGCTCTTTGTCATGGCATTCCCTTGGTACCATGACGGTATTGCGAGGA
TTCTGGTAGTCGTCGCCTATGCGTTCTGCTCTGCACCATTCCTGTGGGCATCCATGGTGA
GGGTGATGGACTCATTGCAAACAATGCTTGAGAGGGATCCGCACTTCCCCCGGCTTGGTG
ACCCTGCACCTGAGACTGAATTTAGCAAACTGTACTGATTCTTTTGTAAAGGTTTGATGT
GCTTCATATCATCATATGGACAGCTGATTCAGATCGGCTGATTCTTCTTGATTCATTCTG
ACTATTTTGTCTCCAGCAATCCGCTTTGTAGCAGAAGTAACTTTAGAACATTGCCTGAGC
AACTAATATTTGAATGCAGATACAAAAGATTGATCAGTTGTACTGAACTGAACGAAAAAA
CATTTCCATTGCATCCGCTGGGGAATGGGTCTGTTGTAAATTATCATTCAGTTCAAACTA
TGTTTGAGCAAGTTAAAAAAAAAAA

Homology of Contig U35_18727 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g40640.1	493	protein\|glycosyl transferase 8 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g33080.1	488
Arabidopsis v10	AT4G16600.1	494	Nucleotide-diphospho-sugar transferases superfamily protein \| chr4:9350039-9352707 FORWARD LENGTH=494