- Probe CUST_5990_PI390587928
- Source Contig U35_18729
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5990_PI390587928 | Hv_44K_v2 | CGCGCTGCCCGCCGCTTCTCTCGCCAGCACGCAAATCCGCCCCCAGATCGGCGCCGGGAG | 86 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.937 | 0.909 | 1.063 | 0.713 | 1.147 | 1.372 |
| Raw | 146.099 | 187.670 | 222.894 | 188.708 | 125.735 | 173.898 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_50393.1 | 516 | 2e-24 | 99 - 158 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_32161.1 | 413 | 8e-25 | 99 - 158 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_18729 | 520 | 3e-25 | 87 - 146 | 100 | 60 / 60 | plus |
Contig Sequence (520 bp)
>U35_18729 520 Hv_44K_v2 GTAGTCCCGAAACCTCTCTCCCCTTCCTTTCTTCCCTGACGCCACCTCGGCCACCACTTT CCCCTCAAATCTCACCTCCTCCGCCACGCGCTGCCCGCCGCTTCTCTCGCCAGCACGCAA ATCCGCCCCCAGATCGGCGCCGGGAGAGCCGTTTCATGGGCGATCTGTGAGCCGCGACGA AACGCAAGCTACTGCCATGAGAGGGCCCCCGAGATGCGCGCTCCTGCTCCTCCTGGCCGC CGCGGCGCTTGTCCCCGCAGCGCGGGCGCAGGGGGCGGCCGCGCCCGCGCCCTCGGCGGG GGCCGCGTTCGCTCCGCGGGACGACATCCTGCTCGACTGCGGCGCCACGGGGAAGGGGAA CGACACGGACGGCCGCCAGTGGGACGGCGACGCGGGGTCCAAGTACGCGCCTCCAAACCT CGCCTCGGCCAGCGCCGGGGCGCAGGACCCCTCGGTGCCGCAGGTGCCCTACCTCACCGC GCGGGTGTCGGCGGCGCCCTTCACCTACACCTTCCCGCTC
Homology of Contig U35_18729 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |