barSeed - Barley Seed Development Database

Probe CUST_5987_PI390587928

Source Contig U35_18732

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5987_PI390587928	Hv_44K_v2	TTGAATAAGGAGAAGGTTTAGACATATGCCGCCGCGCGGCAAAGAAAAAAGAAACTACTC	1055	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.276	0.344	0.681	1.543	1.665	3.000
Raw	31.423	58.395	110.108	369.069	142.460	288.326

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_42140.4	2489	8e-25	2368 - 2427	100	60 / 60	plus
JLOC1	JLOC1_42140.3	2521	8e-25	2400 - 2459	100	60 / 60	plus
JLOC1	JLOC1_42140.2	2885	8e-25	2764 - 2823	100	60 / 60	plus
JLOC1	JLOC1_42140.1	2475	8e-25	2354 - 2413	100	60 / 60	plus
Harvest21	ABC12095	1092	3e-25	1014 - 1073	100	60 / 60	plus	ABC12095
Harvest35	U35_18732	1134	3e-25	1056 - 1115	100	60 / 60	plus

Contig Sequence (1134 bp)

>U35_18732 1134 Hv_44K_v2
CACGCGTCCGAAAGAATCCTCTTCTCCTCCTGACATTACCCAACTTTCCCCTCTTGTCTG
ATTGGTACCCCTCCAACGCCTGCTTCGTGGGATCAGTTCGCCGGAAGATCAACAGCTTTA
GTTGCCTGCTGATCCCTCTTTTGCTTGCTTGATTTGCTCGCGTTTTATGTCGAATGGAGA
TCGTATTTTCCAGTGTGTGGAACGATGCCAGAGCACTCTGAGAATGCCACAGAGAACATG
ATGAGTGGCATCATGGACGCCATCGCCGACAAGCTCCCCAAGCAAAAGTCTGTCAGGTTC
GACATCGACGATCAGGGCTCCATCTCCGGCCAGGCCAAGAAGCTCTTCGGGGGCCACAAG
TCTGTCCACCACATCCTTGGCGGCGGAAAATCCGCCGACGTGCTACTGTGGAGGAACAAG
AAGATCTCATCCAGCGTTCTTGCTGTTGCAACAGCTGCCTGGGTCTTCTTCGAGTGGCTC
GGCTACCATTTGCTGACCATCGTATCATTTGTGCTTGTTTTTGGCATGGTTATCCAGTTC
GGATGGTCCAGCTTCGCAGGCATGCTCAATGGGTCTCCTTCTAACGTGCCCCGTGTAGAG
TTGCCAGAGGAGCTGTTTGCAAACATCGGTGCCGCTGTCGGCGCCCAGGTGAACAACTTC
TTGGGAAGCCTTCAGGATGTGTCCAGTGGAAGAGACCTGAAGCAGTTCCTTATGGTGATT
GCCGGGTTCGTTGTCACCGCTTTCATCGGGAGCTGGTTCAGTCTCATCACCGTTATCTAC
ATCGGGTTTGTGTGTGCACACACTCTACCAGTGTTCTATGAGAGGTATCATGATCAAGTC
GATGAGGTGCTGTACAACATGCTTGGGTTGGTTGGGAGTCAGTACCAGAAGCTTGACAAG
GGCGTCTTGAGCAAGATACCAAAAGGGAACCTCAAGTTCAGGAAGAGCCAGTAGTTGGAC
TGTATGCCGTGTGATCCGGATGAACCTGCTAGAATTAACAGGCTTGTCCCATGTGCATTT
TTTTTTAAAACAAGGCAAAAGACTTGCCAATTTCATTGAATAAGGAGAAGGTTTAGACAT
ATGCCGCCGCGCGGCAAAGAAAAAAGAAACTACTCTCGCGACAAANAAAAAAAA

Homology of Contig U35_18732 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g04910.1	247	1e-132	protein\|reticulon domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g58190.4	250	8e-150
Arabidopsis v10	AT3G10260.3	267	4e-76	Reticulon family protein \| chr3:3171413-3172568 REVERSE LENGTH=267