barSeed - Barley Seed Development Database

Probe CUST_5985_PI390587928

Source Contig U35_18734

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5985_PI390587928	Hv_44K_v2	AAATCAAAGACAATGGCCTCCCTTAGACCGGTCAATGACTAATGAAAAGAATCGGGGGGA	2384	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.277	1.423	1.080	0.871	0.428	0.495
Raw	1438.313	2504.493	1649.270	2109.300	365.275	454.525

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15380.3	1860	2e-24	1584 - 1643	100	60 / 60	plus	ABC10215
MLOC	MLOC_15380.5	1857	2e-24	1581 - 1640	100	60 / 60	plus	ABC10215
MLOC	MLOC_15380.6	1592	2e-24	1274 - 1333	100	60 / 60	plus	ABC10215
MLOC	MLOC_15380.4	1965	2e-24	1647 - 1706	100	60 / 60	plus	ABC10215
JLOC1	JLOC1_10548.2	4267	8e-25	4092 - 4151	100	60 / 60	plus
JLOC1	JLOC1_10548.1	1760	8e-25	1585 - 1644	100	60 / 60	plus
Harvest21	ABC10215	2456	3e-25	2385 - 2444	100	60 / 60	plus	ABC10215
Harvest35	U35_18734	2456	3e-25	2385 - 2444	100	60 / 60	plus

Contig Sequence (2456 bp)

>U35_18734 2456 Hv_44K_v2
GCGCCGTTTCTCCACCACTTCTAAACCCCTGCTATCGTAGCTAGGGTTTGCGCATCCCAT
GTCTACCACGCCGGCGCTCCACGACGCGCTGCTCGACTTTACTTCGCGGGAGAACTGGGA
CAAGTTCTTTGCCCTCCGCGGCGATGGCGACAGCTTCGAGTGGTACGCGGAGTGGCCGCA
AATCAAGGCCCCGCTCCTGTCGCTCCTCCTTGGGGAAGAGGGGACGGAGATCCTTGTCCC
GGGGTGCGGAAGCTCGTCGCTCTCGGAGCAGCTGTACGACCTGGGGTTCCGCCGCATCAC
CAACGTCGACTTCTCCCGTGTCATCGTGGCCGACATGCTCCGCCGACACGCCCGTGTGCG
CCCTCAGATGCGATGGCGCGTCATGGACATGACCAACATGCAGTTTCCAGATGGTTCTTT
TGATTTCATACTTGATAAGGGAGGATTGGATGCTCTTATGGAGCCGGAGGTTGGCACAAA
ACTGGGGATGAAATATCTAGACGAGGCCAAGAGGGTTTTGAAGTCAGGCGGGAAATTTGC
GTGCTTTACTCTAGCAGAATCCCATGTTTTAGACCTACTTTTGTCTGAGTTCAGGTTTGG
ATGGGATATGACTATTCAAGCTATAGCTAGTGAACCCTCTAGCAAGTCTGCCTTCCAGAC
CTTCATGGTGGTCATGGTAAAAGGGAAGATGGGTGTTGTACACACAATAAAATCACTAGT
GGACCAGTCTGCTGAATACTGTAACATGCAGCAGGCAAATGCTGTAATTCATGCTCTGCA
AAATGAGAACAAAATCCGGGAGTCACACAATTCTGGTGTTGATATACTTCTCTCGTTGCG
AGATCTTCAGCTGGGTGCTATTGGAGATCTAAAGGTTATTGTCCCAGGACGAAGGAGGCA
GTTAATTCTCGGTGAACAAGGAAGCTCACTGTTTTGCTACAAAGCTGTTTTAATGGATGC
CAAGAATCAAACTGAAAAATTTGTATACCACTGTGGAGTTTTTATTGTGCCTAAGGCACG
AGCTCAGGAATGGTTATTTGCTTCAGAGGAAGGGCAGTGGCTTGTTGTTGAAAGTGCAAA
GGCTGCTCGTCTAATCATGGTATTCCTTGATAGCAGACATGCAAGTGCTGACATTGATGT
TATCAAGAAGGATTTATCTCCTCTTGTTATGGATATAGAACCTGAATATCCTGAAGAGAC
AGACCCTATGCCGTAACATCAGAAATAACAGGTCCTATGGTTGTGGAAGATGTTCTTTAT
GAAAATGTTGATGGAGACCAAAGCTGCTTGTCTGAAAAAATGTTCCGACGACTTATTTTT
AAAAGAAGTTCTGGCTTAGTGCAATCTGAAGCATTGTTAATCAGAGAATCACCAAGTGAC
GAGACGGACAGTAAGACCAAGAACTCATCTGCATCATCAAAAAAGAAGAGCCAGAAAAAG
GGATTCACTGGATCCAAGGACAGTCTGAGGGTCGACCATAGCTATCTTGGTAGCTCTTAT
CACAGTAGTATCATATGCGGGCTTTCTTTAGTTGCATCTGCTCTGAGTGCTGCGGCATCA
TCTGGAGAAAGGGTCAGTACCACTATTGTAGGCCTTGGGGCCGGGAGTTTACCAATGTTT
CTTCGTGGATGCCTCCCTCATCTTAATATTGAGGTTGTTGAGTTGGACCCCATGATGGAG
GAGGTAGCAACGAAATATTTTGGCTTTTCAATGGATGAGCAACTGAAGGTGCATTTGGGC
GATGGAATCAAATTCATTGAGGAAAATGCCCATTCTGAACCAAGTGGCAAAGACAGCGAT
GCAGTTAGAATTCTTATTGTTGATGTTGATTCATCTGATCTAAGTTCTGGGTTGTCTTGC
CCCCCAGCAAACTTCGTCGAAGATGCTTTCCTTATGTCAGCAAAAAAGTTCCTTTCAGCT
GGGGGCCTACTCATCATCAATCTAGTCGCACGATCATCTGCAGTCAGGGAAATGGTCATT
TCACGGCTGAAAGCGGTATTTGAAACCCTATACTCACTGCAACTCGAAGAAGATGTGAAC
GAAGTTCTGTTTGCGTCCCCAAGCAAAAGATACCTGGAAGTCGATCGCCATGATGAGGCT
GCAACTAAACTGAACGCTATGCTGAAATTCTCGGTGGACGTGGAATCAGATATGAAGAAT
TTGCAGAGGCTGCAGTAGTATAGGCTTCTGTGTTGTGAGGCACCATCCATTACTCCAGGC
GCTCTGATACGAAGAATCCGCAGAGGATGAGGTAGCCAGTAGGTGCGGGCTTCCGTATTG
CAGAGGATGCAGTGTATGTGGAATCTATCTTTTCCAAGCATGATGAATTGCAATTTGTTT
TCTTTATTATTATACCCCAAAGGCGGATCAGCATAGTGGGCCAGAAATCAAAGACAATGG
CCTCCCTTAGACCGGTCAATGACTAATGAAAAGAATCGGGGGGAGCGGATCATGTT

Homology of Contig U35_18734 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g31000.1	751	0.0	protein\|methyltransferase domain containing protein, expressed
Brachypodium v1_2	Bradi5g07370.1	733	0.0
Arabidopsis v10	AT2G31740.1	760	2e-171	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr2:13491053-13495009 REVERSE LENGTH=760