barSeed - Barley Seed Development Database

Probe CUST_5984_PI390587928

Source Contig U35_18735

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5984_PI390587928	Hv_44K_v2	GCAAATGACGGAATACGTTATTGGTTGTTGACATCACCAAACTACAATTGCATGTAAAAA	1518	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.438	1.785	1.201	0.796	0.323	0.344
Raw	638.413	1217.964	717.420	746.272	105.903	123.193

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_32615.1	3123	1e-22	3040 - 3095	100	56 / 56	plus
Harvest21	ABC09510	1590	3e-25	1519 - 1578	100	60 / 60	plus	ABC09510
Harvest35	U35_18735	1590	3e-25	1519 - 1578	100	60 / 60	plus

Contig Sequence (1590 bp)

>U35_18735 1590 Hv_44K_v2
GGTTGAGGCTTAAATTATGAAACTGCTTAACCACTCAAAGGTTCTGTTGAGAAAACAATG
GCTTTATGGTGTTGTTGATGATTTTGTGACAAAGCAACTCCCACACAATGTGACATGGGG
TCTGAGTTTGTTATATGCTCTGGAGCACAAGGGAGACAGAGCTTTGACTTCAACACAAGG
AGAGCTGGCACATGCTCTGCGGTTCTTGGCATCAGTGGTGTCACAAAGCTTCATAGCTTT
CGGCGACATTCTTGAGTTACATAAGAAATTCCTTGAACTTTCTGGTGGGATTAATCGGAT
CTTTGAACTCGAGGAGATTCTGCGTGTAGCTCAAAAGGATACCCCAGTGCCTTCCAGTGC
CATTAGTGCAGCCTCAGACGAAATTATTGAATTCCATGAAGTGGATATTGTAACACCATC
CCAGAAGCTATTAGCTAGGAAGCTGTCATGCAGTGTGGTACAAGGGAAAAGCCTTCTCTT
GACTGGCCCCAATGGTACCGGGAAGAGCTCTGTTTTTAGGGTGCTCAGAGATTTATGGCC
TGCCTTTTCTGGGAGAGTTACCAAGCCCTCTGAAGGGATGTTCCATGTTCCTCAGAGTCC
ATACACCAGCCTGGGAACTCTTAGGGATCAGATCATATACCCTCTGTCAAGGGAGGAAGC
AGAGATGAAGATTCTTTCGTTATATAAGTCTAGCAACAGGTCTAGTGCCCCTGAGTTGCT
AGACGATCACCTGAAGACGGTTCTTGTGAATGTTCGGTTGGTCTATCTTCTAGAGAGGGA
AGGCTGGGACTCTACCCCAAACTGGGAAGACGTTTTATCGCTGGGAGAACAGCAGAGGCT
TGGGATGGCTCGTTTGTTCTTCCACCATCCTAAATTCGGCATCCTCGACGAGTGCACAAA
TGCTACGAGTGTTGATGTTGAAGAGCATCTGTACAGGCTAGCAACAGACATGGGCATAAC
TGTGATCACTTCGTCACAAAGGCCTGCTCTTATACCCTTCCACTCCGTGGAGCTTAAACT
CATCGATGGTGAGGGGAACTGGGAGCTATGCGAGATCCAACATTGATTGACACCACCAGC
TAGAGTTTTTATCTGCTCTCAGTCACTTATGCCATACAGAAGATGCGCTACTGTAGCAAG
TTGTTCATACCGGGTCGCCCTCCCGACCATCTGGAAGCAGGAGCAGCATGTACAACTGTG
AATCCTCATCAGGTATTCGGCACTGAAGATGGCAGTCAGTCTAGTTATACCAAATTTAGT
AACAAACTGAATGAGCAGGGGACGGAGGTAAAACTGGTTGCTTAGGATTGAGAGGTGTTT
CGATTTGGAGGTGTGAAGTAGGATGAGAGTGTAGAACAGCAGTACATAATCTCTCTCAGA
GCAGCTGTTGATGTGAATTATCAAACCTATTATTGATTGATTCCATGCTAGTGCAGTACA
TATGGAATAAATTTGGCTGTTGTTGCCATCATCTTTGTCGTTCGTCTTTGTCATCTAAAG
ATGTGTAAACAAAAGGAAGCAAATGACGGAATACGTTATTGGTTGTTGACATCACCAAAC
TACAATTGCATGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18735 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g01700.1	1131	0.0	protein\|ABC transporter, ATP-binding protein, putative, expressed
Brachypodium v1_2	Bradi2g39420.1	1246	0.0
Arabidopsis v10	AT4G39850.3	1352	4e-167	\| Symbols: PXA1 \| peroxisomal ABC transporter 1 \| chr4:18489220-18496762 FORWARD LENGTH=1352