barSeed - Barley Seed Development Database

Probe CUST_5982_PI390587928

Source Contig U35_18737

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5982_PI390587928	Hv_44K_v2	CGGCAGGTGGCAACGTTTTTCTGTCTTTGTGTGCTGGCTGAATTGTAAATTATAGTTAAA	1308	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.481	1.533	1.089	0.881	0.376	0.273
Raw	791.322	1273.377	802.318	1020.021	153.896	121.510

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_2768.2	3155	8e-25	2968 - 3027	100	60 / 60	plus
JLOC1	JLOC1_2768.1	1949	8e-25	1762 - 1821	100	60 / 60	plus
Harvest35	U35_18737	1407	3e-25	1309 - 1368	100	60 / 60	plus

Contig Sequence (1407 bp)

>U35_18737 1407 Hv_44K_v2
GAAACTCTGAAGTCCCTGAGGACAGTATGTGGATTGGATAGTACCGCACATAGTGATGCC
TTGAAAAAAGATGCAGGGTTGGAGAAAAAGGAAGCACCACGATTGGTGGATGTGTCTGAA
GAGGAGGAATGGTCAATTGTCCAGGGTGCTTTGCAGGTTCTTACAGTTGCTGATTGCTTA
ACTAGCAGAACCTCGGTTTTCGAAGCTTCTTTAAGGGCTACTCTTGCCAGGATTGGAACA
AACTTTTCTCTTTCCGGATTTGGTTCTACCATGGATAAATCACCTGCTGGTACTGCTGAT
GAGAGCTCGGGAGCTCCTCTGGGTGGGAGGGCAGCACTTGATATTGCAACCATTCGACTC
ACCAGTCTACCAGACAAGTCTAAGAAACTCCTCACTGTACTGGAACAGTCAAAAGATCCT
AGGTTCCACGCTCTTCCTGTCACGTCACAAAGAGTCGCGGCCTTCTCAGACAAAGTAAAC
GAGCTTGTGTACGATGTTCTCATTTCCAAAGTCCGGCAACGTCTCAGTGAGATAGCCCGC
CTCCCAATCTGGTCATCCGTGGAGGAGCAGGGTGGTCTTCCTCTTCCAAGCTTCAGTGCG
TACCCACAGGCATACGTGACCAGTGTCGGGGAGTATCTCCTCACTTTACCACAGCAGTTG
GAGCCTCTCACCGAAGGCATCTCAGGCAGCGAGGCTGGCAACGATGAGGCTCAGTTCTTT
GCTACAGAGTGGATATTCAAGGTCGCCGAGGGTGCCACCGCTCTGTTCATGGAGCAGCTG
CGCGGGATCCACTACATCACGGACCGGGGCGCCCAGCAGCTCGCGGCGGACATCGAGTAT
CTGAACAACGTCCTCTCGGCGCTGTCGATGCCGATCCCTCCATTCCTGTCCACCTTCCAC
GCCTGCATCTCTACCCCGAGGGACCAGGTCCGCGACCTGATAAAATCGGAGGGCGGAACC
CAGCTGGACCTCCCCACCGCCCATCTGGTCTCCAAGATCCGGCGCATATCGCTAGAGTAG
TGGGAAAAGAATGTTGGTTGCTGTGGTATTTTTGCAAGTCATACTAGCTCTGTAAAAGCA
TGCGTCCAAGTGTGTGTCCCTCCCACATCCTGAGCAATTCGCTCATGTGTCCTTGCTTCC
TCTATTCATCCTCTTCTTTCCCCCTTTTGGAGACAGCGAGCTTTGCCTCTGTAAGTTGTA
ACTGTACTGCTTGCAGGTATAGAGAGTATCATACAGTATCACAGACGTCATTCAGAGAAT
CATACAGTAATTTGGCTGACCCAAATAAACAGCAGGGGAATTGTTAGTCGGCAGGTGGCA
ACGTTTTTCTGTCTTTGTGTGCTGGCTGAATTGTAAATTATAGTTAAATTATTTTTTCAG
AAAACTTCTGATCTAAAAAAAAAAAAA

Homology of Contig U35_18737 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g45830.1	826	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi1g32317.2	790	0.0
Arabidopsis v10	AT5G51430.1	836	4e-143	\| Symbols: EYE \| conserved oligomeric Golgi complex component-related / COG complex component-related \| chr5:20887044-20890795 REVERSE LENGTH=836