barSeed - Barley Seed Development Database

Probe CUST_597_PI390587928

Source Contig U35_26064

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_597_PI390587928	Hv_44K_v2	AAGATTCCAATCTTGGTTGATGCGGAACCAGAAAGAACAAAGACAGAATTGGAAAGTTTG	639	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14780.1	829	2e-24	105 - 164	100	60 / 60	plus	None
MLOC	MLOC_14781.1	5074	2e-24	105 - 164	100	60 / 60	plus	ABC11312
MLOC	MLOC_14780.2	1731	2e-24	105 - 164	100	60 / 60	plus	None
JLOC1	JLOC1_10099.2	1046	8e-25	104 - 163	100	60 / 60	plus
JLOC1	JLOC1_10099.1	1059	8e-25	121 - 180	100	60 / 60	plus
Harvest21	ABC24107	702	3e-25	640 - 699	100	60 / 60	plus
Harvest35	U35_26064	702	3e-25	640 - 699	100	60 / 60	plus

Contig Sequence (702 bp)

>U35_26064 702 Hv_44K_v2
CCGCCGTGGATCCCTCCACTCCTCCGCGCCTCCTCCTCGAAATAGGCTTTCCGCGCCTCC
CGGTGCCCGCGCCGCCGCTGTCCATGCCCTCGCCGCGAACCGCGTCGTGCTGGGGTGCGG
GCTGGTGACGCTGGACTACCTCGCCACGGTGGACGCGTACCCGCGGCCCGACGACAAGAT
CCGCAGCGGGGAGCTGCAGGTACCCTACCCAATACCCATCCAGCGCGCGCGGTTGCCTAG
CTAGTTCCTCCTCCACGAGCTGGATTTGCGACAGGCGTATACTGTACTAGTGGCCGTTCC
GTGGTGGTTCTTTGTGTGCGCAGATATCGGGAGGCGGGAACGCCGGGAACGCATTGACAG
GCGCTGCTCGTCTGGGCCTCAACACCAGGCTCATCTCCAAGGTCGCCAACGATAAAATAG
GAGGAACTGTTCTTTCGGAACTTGAGGAAGCTGGGATTGACGTGTCACATGTTATTGAAA
ACCCGAACGTGTATAATCACGTCAGGCTACCCTCCAATGGTTCCTGGTGACATATCAATG
TCAAATTTGTCAGCTCCACTACAAGATGTAAACTTGCTATACCTAGACGGATATTCACAT
GAAATGGCACTATCTGTTGGTAAGCAGGCTGATCTGATGAAGATTCCAATCTTGGTTGAT
GCGGAACCAGAAAGAACAAAGACAGAATTGGAAAGTTTGCTC

Homology of Contig U35_26064 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None