barSeed - Barley Seed Development Database

Probe CUST_5976_PI390587928

Source Contig U35_38266

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5976_PI390587928	Hv_44K_v2	AAGTCCAGTCTGGAAAGCTGTGAGAAGGCCAAGGATGATTGTATTCTTCAACATGAACTC	621	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370249	4210	2e-24	2429 - 2488	100	60 / 60	plus	ABC18704
MLOC	MLOC_42888.1	322	2e-24	146 - 205	100	60 / 60	plus	None
JLOC1	JLOC1_27724.1	345	8e-25	169 - 228	100	60 / 60	plus
Harvest21	ABC34156	681	3e-25	622 - 681	100	60 / 60	plus
Harvest35	U35_38266	681	3e-25	622 - 681	100	60 / 60	plus

Contig Sequence (681 bp)

>U35_38266 681 Hv_44K_v2
CTACCCCAAGACCCTAATGAGTGGAAAGATGCCATGCTAAGTCAAGAACCTAGTGGCTTA
TCTGCACGAGAGTCCGAGGCAATTCTTGTCATTAAACAGCTTCAAGACCAGGTAAACTCG
CTGGAGTTAGAGAAGAGTTTGATTCAAAATAATTTGGACGATGTTCTGGAGGTGGCAACG
CAGCAGAAGGCTTCTTTCAGTGAGAAGTATGAAGAGCTTCACAAGAATGTTCTGGCGGCA
CAAGAAGAAGCAAAAATTGCTAGTGAGAAGCTATCAGCTCTGGCTACTATTGGAAAATCC
AAACAAGAACTAGCAGATGAATTCCTCAGCAATGTGTTAATGGAGACTCAAGGAATATCT
GTGCAGATGGATCAAACAACCTACTCAGTCGACAATGCTGTTTCCTTCATTGAGGAACTC
TTTCAGTGTCTGTCTGCGATTGCAGAGAACGTAACTGAATTCAAGCAGTCTGCTTACGGG
CATATAAAACAATCTGGTTATGTGATCATGGATCATGAGAAAATGTCAAAAACATTGATG
GAGAAAATCAGCAGACTTGAATTGGAGAAGAAGCATCTACACGAACAGTTCCTTAATCAA
CGGGATGAACTTCAGAGGATGAAGTCCAGTCTGGAAAGCTGTGAGAAGGCCAAGGATGAT
TGTATTCTTCAACATGAACTC

Homology of Contig U35_38266 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g30490.2	1055	9e-84
Arabidopsis v10	None