barSeed - Barley Seed Development Database

Probe CUST_5975_PI390587928

Source Contig U35_38267

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5975_PI390587928	Hv_44K_v2	TCTCAAATGGGCAATTTAGATATGTTGCTGGTGAGGGGATAACAGCAAGTGGTTTTCTCC	512	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.346	0.335	0.986	1.348	0.991	1.166
Raw	3.647	5.483	19.190	42.616	10.816	13.879

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374653	2783	2e-24	1905 - 1964	100	60 / 60	plus	None
MLOC	MLOC_56548.2	935	2e-24	846 - 905	100	60 / 60	minus	None
MLOC	MLOC_56548.1	1440	2e-24	1028 - 1087	100	60 / 60	minus	None
JLOC1	JLOC1_36580.3	1554	8e-25	990 - 1049	100	60 / 60	plus
JLOC1	JLOC1_36580.2	1909	8e-25	990 - 1049	100	60 / 60	plus
JLOC1	JLOC1_36580.1	1273	8e-25	354 - 413	100	60 / 60	plus
Harvest21	ABC34157	615	3e-25	513 - 572	100	60 / 60	plus
Harvest35	U35_38267	615	3e-25	513 - 572	100	60 / 60	plus

Contig Sequence (615 bp)

>U35_38267 615 Hv_44K_v2
GGTCCGATGAAGAAGAAGAGGGGTTCGAGTTCGAGATTGGGACTCTGGGAAGATTTATGA
AGCCTCAGGTTTAGAGTGTAATTGTACTGGGTCTGCGGTGCTGAAACACATTCAATATGC
TCAAGTACACATCATAACACCTGTAATGATGATGATGCAGGGGACTGTAAATGTCTCGGC
AATGTACAATACAAGGCACCACACTGTTGATAGTTCAGTTGTTGCACGTGGAGATTTTTG
GAGGTTAGAATCATCACGAGGTGGTTCAACTAATGGAAATGACAATGCACCTGGTTTCCT
TATTCAGTTGGGTCCCTTACTTTTTGTGCGAGACTCTACAACACTTCTTTTGCCTATTAA
TCTGTCAAAGCAACACCTCATTTGGTATGCTTATGATCACAAGAATGGAGTGCATTCCTT
ATGTCCAGTTATCTGGTCAAAACAGAAAAAATGGTTGCTGATGTCCATGATGTGCCTCAA
CCCAGTAGCTTGTGCCTTCATGGATGTGGAATTCTCAAATGGGCAATTTAGATATGTTGC
TGGTGAGGGGATAACAGCAAGTGGTTTTCTCCCATTATTTGGTGGATTGCTTCAAGCTCA
TGGAAAAATTCCTGG

Homology of Contig U35_38267 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52920.1	489	2e-81	protein\|expressed protein
Brachypodium v1_2	Bradi2g18990.1	504	3e-87
Arabidopsis v10	AT3G14830.1	476	6e-61	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53450.2); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:4983386-4985666 FORWARD LENGTH=476