barSeed - Barley Seed Development Database

Probe CUST_5968_PI390587928

Source Contig U35_26292

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5968_PI390587928	Hv_44K_v2	TAAATCAAAGGCTAAGAACAATAAGCTGGGCCTCAGACACCTACGCCAAATGTTGGCTCA	573	GeneList: cyan MasterList: Cell_cycle_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.010	1.336	1.047	0.834	0.567	0.487
Raw	67.156	58.831	48.613	56.190	14.161	13.478

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363462	2443	7e-23	574 - 634	98	60 / 61	plus	ABC21576
MLOC	AK366396	2114	7e-23	574 - 634	98	60 / 61	plus	ABC21576
MLOC	MLOC_20867.1	1080	7e-23	544 - 604	98	60 / 61	minus	None
JLOC1	JLOC1_14465.1	977	4e-23	468 - 528	98	60 / 61	plus
Harvest21	ABC27910	639	1e-23	564 - 624	98	60 / 61	plus
Harvest35	U35_26292	648	3e-25	574 - 633	100	60 / 60	plus

Contig Sequence (648 bp)

>U35_26292 648 Hv_44K_v2
TGCTCTCTTTCTCTTTCGTCCCCCCTTCCCCCTTCTCTCTCCCTCTATTCCCCTCCTTTC
CCACCTCCCTAACCCCACCCACCTACCTCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGG
AACCCCATCTCCGGCGGTCCCCCCGATGCCCTCCTGTCTTCTCTGAAGCCGAAGCCGCCC
ATCACTCCCGGGAGTTGGGGGTCCCGCAGCGCGCGATCGCGAGATCGGGCTTATGTCGGG
GGGCGGCAGGCCGCCGGCTGCTCAGAAAATCCTGCAGTCGCTGCGCCCACCCCCGGTGTT
CTCCACACCATCGCGGCCTCCCTTCGCCTCACCCGACGACTACCATCGCTTTCATGCGCC
GACTACCCCTTCTGCCTCCGGCTCAGGCGGCATCGGCGCCGGTGGTGTTGGCGGCGATAT
TGATGAGAGGCTTGTTATCCGGACGCAGCTAAAAAGAAAAGCCACACGTGAAGAAAATAA
TGTGACTGAGTCGAGTGACTGTATGATTGTCACCACTGGAGTTACTGGCAATCCACTACT
CACCCCAGTCTCCGGAAAAGCTGTTAAGAATTCTAAATCAAAGGCTAAGAACAATAAGCT
GGGCCTCAGACACCTACGCCAAATGTTGGCTCACCACTCAATCCATCA

Homology of Contig U35_26292 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None