barSeed - Barley Seed Development Database

Probe CUST_5966_PI390587928

Source Contig U35_26293

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5966_PI390587928	Hv_44K_v2	TTGTATGAATCTCGTCGGTTCATGTGAAAACAAAAACGGGTGCAGTTCATCTGGGTTAAA	881	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78234.1	1814	6e-24	1755 - 1813	100	59 / 59	plus	ABC22963
MLOC	MLOC_78233.2	4088	6e-24	2261 - 2319	100	59 / 59	minus	ABC04928 ABC22963 ABC48407
MLOC	MLOC_78233.1	3391	6e-24	1424 - 1482	100	59 / 59	minus	ABC04928 ABC22963 ABC48407
MLOC	MLOC_78233.3	3631	6e-24	1423 - 1481	100	59 / 59	minus	ABC04928 ABC22963 ABC48407
JLOC1	JLOC1_52141.1	1775	3e-24	1696 - 1754	100	59 / 59	plus
JLOC1	JLOC1_52140.2	3666	3e-24	1706 - 1764	100	59 / 59	minus
JLOC1	JLOC1_52140.1	3383	3e-24	1423 - 1481	100	59 / 59	minus
Harvest21	ABC22963	955	3e-25	15 - 74	100	60 / 60	minus	ABC22963
Harvest35	U35_26293	955	3e-25	882 - 941	100	60 / 60	plus

Contig Sequence (955 bp)

>U35_26293 955 Hv_44K_v2
GGACAGCACTGAGGCTCCATCCGCCACGGATAAGAACCATGGGGAACCTTTCGAGCTGGC
AATTGTGATTGTAACGACGGCTCTGGTGCAGCATTAGTCACGGAGGAAGATGGCAGCGAG
GCTCCAGCAGCCAAGCGGCCGCACTTGGACATGGAACCTGCTTCATTCAGTACACCAGAG
TGCAGCACCCAGCCCTGCAAACCACCCCTTGTGGCAGCTGACGAAAACTCTGCTCCAGCG
CAAGTCCCCGGCAAGGAGGATGACGCCCAAGCTCCATTTGTGAAGCACAAGCGCAGTCGT
CGGACCTGCAGATCAGAGCCGGCAAAGTCCACCTGCGGCTCTGCCCCAACATCTATTGCA
GACAAGAAGGCCGCTGGCAACGCTGCATCTGCTCCACCCAAGGGCCATGACTGGTTGCGC
AAACCGACATTGATGGCCGCGGCCGGCGATCTTACACCCAGCGAGGCTCGATCTGTGCCG
GTCAAGCCGCGCCGCAAGCCTCGCAAACAGTTTCTGCTGAACTTTTATGACGAGGTACCA
AATAATCCGAACTTGTGTGTGCTCGCACTGCCTGCCCAGGTGCCGGAGGTAACAAAGGGG
AAGTAGTTCTGAAACCGGGCATGGCAGCTCATGAAGCATCGTTCATAATTGGAAGAACGC
CTCTTGGGTTCCTAAATGCAGTGCACATGACGATAGCTTTTGTGTTCTATCCATAATCGG
CAGTTTTAGTTTTTTTATTGTTATTGTTGAACTTTAGCAGTTTTAGGGGTTATTTGAACT
AGTTAGAGATATTTCTCTTCGAAGCTCCAGTTTAGTTCAAGTCTGAATAAATACCACCCT
CCATCCAAGGAGGTCCCTTAGGGGTATCCATGAGATTGAATTTGTATGAATCTCGTCGGT
TCATGTGAAAACAAAAACGGGTGCAGTTCATCTGGGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_26293 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None