barSeed - Barley Seed Development Database

Probe CUST_5964_PI390587928

Source Contig U35_26294

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5964_PI390587928	Hv_44K_v2	TTTCGTGAAAACTGATTCTAGTCTCTTCATGATCAAGCTGCAGTCGGAGCAGGGGGAAAA	0	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69523.3	2835	2e-24	1060 - 1119	100	60 / 60	plus	ABC38149
MLOC	MLOC_69523.1	2786	2e-24	1636 - 1695	100	60 / 60	minus	ABC38149
MLOC	MLOC_69523.4	2057	2e-24	1694 - 1753	100	60 / 60	minus	ABC38149
MLOC	MLOC_69523.5	2472	2e-24	1416 - 1475	100	60 / 60	minus	ABC38149
MLOC	MLOC_69523.2	2649	2e-24	1499 - 1558	100	60 / 60	minus	ABC38149
JLOC1	JLOC1_46067.3	1825	8e-25	305 - 364	100	60 / 60	plus
JLOC1	JLOC1_46067.2	2613	8e-25	1093 - 1152	100	60 / 60	plus
JLOC1	JLOC1_46067.1	2758	8e-25	983 - 1042	100	60 / 60	plus
Harvest35	U35_26294	845	3e-25	1 - 60	100	60 / 60	plus

Contig Sequence (845 bp)

>U35_26294 845 Hv_44K_v2
TTTCGTGAAAACTGATTCTAGTCTCTTCATGATCAAGCTGCAGTCGGAGCAGGGGGAAAA
GGTGTGTGATGATCATGGCTTCTGTAATTTGATTCCAGTTGTCAGCTTCTACACTCCACA
TTCTAGGCTCCAAGTGCCAGGGGGTGAGCACCACGGCCCAGCGGCACCGCCGCTGAACCT
ACTGAGGAGGGGTGGTCAGCAAGTGGCATGGGAGGAGAAATCACTAGAATGGGCGCAGGT
GCTGTTTGATAAGGGGTGCAAGGCTATCAATGAGAAGGACTTTGCCAACGCCGCAAACTG
CTTCAGAGATGCTCTCAAGATCAGGGTTCAACATTATGGAGACCTTGCTCCTCAGTGTGC
TAGCACGTTTTACTGTTATGGATGTGCCCTGTTAGCTAAAGCTCGGAAGGCGACCAATCC
TTCAGGGGCAAACTTGCATGGCAAAGGTCAGAAGGATGGGAACATGACAGGCGATAGAGA
TGATTCTGATTTGGATTTGGCCTGGAAAATGTTGAATACTGCAAGGGTGATAGTTGCCAA
GAGTCCAGACAAGACAATGGAGAAGGTTAATATATTGAATTCTCTGGCTCAAATCTCCAT
GAGAAGAGAGGACACAGACAGCGCAATCGGTTACTACTTCGAAGCTTTAGCGATCTTGGA
ACATTTGGTTAGGCCTGACAATTTTCGAATTTTCGAGCAAAACGTCCGCATTAGTTTGGC
CTTCGGGTTAGAATCAAAGGCTGGGGATGCAATCCCATATTGTGCAAAGGCTATTTCAGT
AGGCAAGTCGTGTATGCATAATCTGATAAATGCCAAGGAAAGCTTGTTGTCTGCTAAAGG
ACAGT

Homology of Contig U35_26294 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None