barSeed - Barley Seed Development Database

Probe CUST_5952_PI390587928

Source Contig U35_38275

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5952_PI390587928	Hv_44K_v2	TACTCACACGCTTCTTCATTTGCAAGAATAATGGAAGGAGGTTATGCGAGGCGACTTTTG	297	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.251	0.387	1.022	1.791	1.104	1.387
Raw	93.267	234.161	526.825	1462.376	314.892	436.290

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65968.1	1270	2e-24	701 - 760	100	60 / 60	plus	ABC05654 ABC33634 ABC44997
JLOC1	JLOC1_43450.1	1484	8e-25	724 - 783	100	60 / 60	plus
Harvest21	ABC34171	594	3e-25	298 - 357	100	60 / 60	plus
Harvest21	ABC05654	1377	3e-25	714 - 773	100	60 / 60	plus	ABC05654
Harvest35	U35_38275	594	3e-25	298 - 357	100	60 / 60	plus
Harvest35	U35_16007	1324	3e-25	717 - 776	100	60 / 60	plus

Contig Sequence (594 bp)

>U35_38275 594 Hv_44K_v2
GGTGAAAGCTTCTGCGACACTCTTGGGAGTACCCCTTGGGCACAACTCATCTTTCTTGCA
GGGGCCTGCATTTGCTCCTCCTCGCATAAGGGAGGCCATTTGGTGTGGAAGCACCAACTC
TAGCACAGAAGAAGGCAAGGAATTAAATGATCCAAGAGTGCTAACTGATGTTGGTGATGT
CCCTATACAAGAGATTCGTGACTGTGGTGTTGAAGATGACAGATTGATGCATGTAATCAG
CGATTCTGTCAAAACAGTGATGGACGAAATATCTATGATTGTTTTGAAGGGAACACTTAC
TCACACGCTTCTTCATTTGCAAGAATAATGGAAGGAGGTTATGCGAGGCGACTTTTGCAG
GTTGGACTTAGATCAATTACCAAGGAAGGACGTGAGCAAGGGAAGAGATTTGGTGTGGAA
CAGTATGAGATGCGCACCTTCTCCAGAGATCGGGAGAAGCTTGAGAATCTGAAACTTGGG
GAAGGTGTGAAGGGGGGTGTATGTCTCCGTCGACGTGGACTGCCTTGACCCCGCATTCGC
TCCTGGTGTCTCTCATATCGAGCCGGGAGGCCTCTCGTTTCGCGACGTGCTCAA

Homology of Contig U35_38275 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g01590.1	341	1e-69	protein\|arginase, putative, expressed
Brachypodium v1_2	Bradi5g02160.1	343	1e-57
Arabidopsis v10	AT4G08900.1	342	4e-93	arginase \| chr4:5703499-5705180 FORWARD LENGTH=342