barSeed - Barley Seed Development Database

Probe CUST_5948_PI390587928

Source Contig U35_38279

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5948_PI390587928	Hv_44K_v2	TTTTCAGATACAAGGCTGGCATTCCTGGAACTTGACAGCTCTGATGAACCATCTGTATCG	423	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.740	1.106	1.829	1.959	0.766	0.890
Raw	91.507	222.512	306.557	531.677	71.865	91.554

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55617.1	2894	2e-24	590 - 649	100	60 / 60	minus	ABC05411
JLOC1	JLOC1_35902.1	1302	8e-25	664 - 723	100	60 / 60	plus
Harvest21	ABC34179	662	3e-25	424 - 483	100	60 / 60	plus
Harvest35	U35_38279	662	3e-25	424 - 483	100	60 / 60	plus

Contig Sequence (662 bp)

>U35_38279 662 Hv_44K_v2
TCCAGGAGGGGGAAGAAGGTCTCCGGGGCCGGGAAGAAGAGGCCCGAGGCGGCGCCGCAC
CACTTCTCCGAGGTGACGGAGGTGGGTGCCTGGAGGAACGGGGATTCGGGGGTTCCGTTT
GATGAAGGTGAAGATGTTGAGTATGAAGATGACAGTGATGATGAATATGATGGCATTCTG
AAGCCTGCCTTTGCGGTTGATGGGGAGCCTGATTTCGAGTCGGGCGAGCCGCTCGACGGT
TTCGAGTATCTTCGGCGTGTCAGGTGGGAAGCTAACCAGATTCCTAAAGTGAAGGTGGCC
AAGATAGACTTGAGTGCAGCTAGAAAGGAGCAAACACCTTATATGCCAGAAATTCCTGAC
ATACCGAAGTGTTCACCTGATTTGTGTGCATCAAAGGAATGGGAGGACTCCTTTATTACA
TATTTTTCAGATACAAGGCTGGCATTCCTGGAACTTGACAGCTCTGATGAACCATCTGTA
TCGGGAGCGGTGAAGAACCCCTGTAAACCCGGCATAAGCTTCGAGCCGCAGATTGACCCG
ACACTGACGATGATTCGCAAGATGGATGCAGTTTCAAGAGCCGCAACACTGCGCAACTAC
ATCGGTATGATCCAAAGCTTTGATGCGCTGTCAAGGAACGACTGCCTNGTGGCTGTTTGC
GC

Homology of Contig U35_38279 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g18830.1	367	4e-99	protein\|survival motor neuron containing protein, expressed
Brachypodium v1_2	Bradi3g54880.1	334	5e-103
Arabidopsis v10	None