barSeed - Barley Seed Development Database

Probe CUST_5932_PI390587928

Source Contig U35_38287

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5932_PI390587928	Hv_44K_v2	CCGGATCTGGGCCTCTGGAAATTACCCACCATGGCAGTGTAAAGAAAGTTTTTGAATACT	538	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.489	2.149	1.236	1.026	0.709	0.766
Raw	24.674	31.998	16.817	20.753	4.045	5.033

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375207	3709	2e-24	2775 - 2834	100	60 / 60	plus	None
MLOC	MLOC_61738.2	1870	2e-24	965 - 1024	100	60 / 60	plus	None
MLOC	MLOC_61738.1	3095	2e-24	2116 - 2175	100	60 / 60	plus	None
JLOC1	JLOC1_40361.1	3118	8e-25	2097 - 2156	100	60 / 60	plus
Harvest21	ABC34189	598	3e-25	539 - 598	100	60 / 60	plus
Harvest35	U35_38287	598	3e-25	539 - 598	100	60 / 60	plus

Contig Sequence (598 bp)

>U35_38287 598 Hv_44K_v2
CTTGGAGCTGGGGCTATTATAGTAAACCCATGGAATACTGCAGAAGTAGCACGCGCGATG
AAACGTGCTTTGGATATGTTACCTGATGAAAGGGAGAAACGTCACAGGCATAATTATGAA
ATTGTGTCAGCTCACACTGCACAAGACTGGGCAGAAAACTATGTCCGGGAGCTCAATGCT
GCAACTATTAAAGCTCCGCTAGGAACAGGAAAAAGTGTTGGACTCCCTATTAAAGAAGCA
GCTAAACAATACGTGCAATCCAAAAGTCGTTTGCTCATATTGGGCTTTAATGCGACATTG
ACTGAACAGGTCCAATCTTTTGAGAGAAGGGCTACTGACCAAAATGGGAACACGACACTC
AAGTTGAACCCTGGGTTGAAGGGATCCCTGAAAACCCTTTGTGACAGTGAGGATACAACT
GTTATTGTTGTCAGTGGTCATGGCAAAAGTGTTCTCGATGAGAATTTCGGAGAATTTAAA
ATGTGGCTATCAGCAGAGAATGGGGTGTTTCTACGACAAACTGGTGAAGACTGGACCGCC
GGATCTGGGCCTCTGGAAATTACCCACCATGGCAGTGTAAAGAAAGTTTTTGAATACT

Homology of Contig U35_38287 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g44210.2	476	1e-67	protein\|trehalose-6-phosphate synthase, putative, expressed
Brachypodium v1_2	Bradi2g19640.1	969	2e-63
Arabidopsis v10	AT1G78580.1	942	2e-58	\| Symbols: ATTPS1, TPS1 \| trehalose-6-phosphate synthase \| chr1:29552495-29557482 REVERSE LENGTH=942