barSeed - Barley Seed Development Database

Probe CUST_5929_PI390587928

Source Contig U35_38290

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5929_PI390587928	Hv_44K_v2	AAGTACATTGACAGCAACTTTGATGGCCCGGCATTACTACCTGATGATTCTGCACAGAAG	426	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52661.3	1143	7e-23	631 - 690	98	59 / 60	plus	ABC03294 ABC03295
MLOC	MLOC_52661.1	1268	7e-23	542 - 601	98	59 / 60	plus	ABC03294 ABC03295
MLOC	MLOC_52661.2	1211	7e-23	530 - 589	98	59 / 60	plus	ABC03294 ABC03295
JLOC1	JLOC1_33761.1	1649	4e-23	522 - 581	98	59 / 60	plus
Harvest21	ABC34195	574	3e-25	427 - 486	100	60 / 60	plus
Harvest21	ABC03294	1057	1e-23	373 - 432	98	59 / 60	plus	ABC03294
Harvest35	U35_38290	574	3e-25	427 - 486	100	60 / 60	plus
Harvest35	U35_1086	1058	1e-23	373 - 432	98	59 / 60	plus

Contig Sequence (574 bp)

>U35_38290 574 Hv_44K_v2
CCCACACCGCTGGGACTTCTCCCCGAACCGCCGCCATCGCCATGGCAGCCGCTGTTGCGC
CGGTCATGTGAGTGATCGATGCAGCAGAGCATGGTGCAGTGACGCAGTCCGGCGCTCTCT
GGCCGTTCCGAGTCTCGACTAAATTACTCTGATTTCCTAACGTCCTACTCTGGCAGCTCC
CCGAAGGAAGATCTCCCCCCTCCACTCAACTCCGCCTCCGAGCCCCCTCCGCTCTTCGAC
GGCACCACCAGGTTGTATCTTGCATATCACTGCCCGTACGCGCAGCGCGCTTGGATTACC
AGGAACTGCAAGGGCTTACAGGACAAGATCAAGGTAGTCGCCATAGATCTGGCAGACAGG
CCAGCTTGGTTCAAGGAGAAAGTTTACCCGGACAACAAGGTGAAAGGAGAGAGCTTGGAT
TTGGTCAAGTACATTGACAGCAACTTTGATGGCCCGGCATTACTACCTGATGATTCTGCA
CAGAAGCAGTCTGCTGAGGAACTGCTTGCGTTCAGCGATGGGTTTAATAGTGCATTTCTC
TCCTGCTTCCCCTCCAAGGGAGATGTATCAGCTG

Homology of Contig U35_38290 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g17470.1	246	2e-56	protein\|IN2-1 protein, putative, expressed
Brachypodium v1_2	Bradi1g66030.2	280	8e-62
Arabidopsis v10	None