barSeed - Barley Seed Development Database

Probe CUST_5925_PI390587928

Source Contig U35_38296

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5925_PI390587928	Hv_44K_v2	ATGTAAATCTAGGATGTATCATGTTGTGTTGTTGGTCCATGAATGAAGCATGCATGCATC	436	GeneList: lightcyan1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.062	0.174	0.924	2.215	1.445	1.572
Raw	2.683	21.909	101.821	328.133	92.279	107.082

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12223.1	970	7e-23	819 - 878	98	59 / 60	plus	None
JLOC1	JLOC1_8196.1	970	4e-23	819 - 878	98	59 / 60	plus
Harvest21	ABC34207	496	3e-25	437 - 496	100	60 / 60	plus
Harvest35	U35_38296	496	3e-25	437 - 496	100	60 / 60	plus

Contig Sequence (496 bp)

>U35_38296 496 Hv_44K_v2
GCTTCGACTCATGGTACCAACACCAATAATACCAATGTGCCATGCTGCTCCTCCTCCAAC
TCAACACCATCACTGACAACCCGCACCAACTCAAGCACCTTGGACAGTGAGTTGTCAAAT
TACAACATGGCAGGGACGTCGGAGTTGGAGGACTTCGATGAGTATGTGGCGGGGCTTCCC
AAGCCAGAAGACTATGGCTTGGATGGGTTTGAGGAAGTGATGGACGAATAAGGCAGAGGA
GGGATCAACATCTAGGACCCCACCGTCGCATCTGAGTGACATACCATGCATGGCTAGCAA
CCGCTTCTTCCCGCAGCAACCCAACTCGTGGTGATTATAGATCTCGCCGTCAACATTAAA
AGAAGAAAGTACATGGAAAATTATATACACCGTTGGTGCTCTCTTTCTACTTAGTATGTT
TTGTATATGTTGGTCGATGTAAATCTAGGATGTATCATGTTGTGTTGTTGGTCCATGAAT
GAAGCATGCATGCATC

Homology of Contig U35_38296 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None