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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_5921_PI390587928Hv_44K_v2TGCATGCATGATTGGCTTTGGCTTTGTCCATCGCATTTACACATGCTTGTTATGAAAAAA606GeneList: salmon
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 4.9746.2070.8790.7565.2720.740
Raw 49.983102.80811.28815.76144.9295.012



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_74945.527789e-222707 - 276110055 / 55plus None
MLOCMLOC_74945.811759e-221107 - 116110055 / 55plus None
JLOC1JLOC1_49962.424345e-222193 - 224710055 / 55plus
JLOC1JLOC1_49962.321995e-221958 - 201210055 / 55plus
JLOC1JLOC1_49962.219615e-221720 - 177410055 / 55plus
JLOC1JLOC1_49962.121965e-221955 - 200910055 / 55plus
Harvest35U35_92026773e-25607 - 66610060 / 60plus



Contig Sequence (677 bp)

>U35_9202 677 Hv_44K_v2
ACCCCTACGCCCCCGGGCCGGCGCCCATGCACATCATGCCGTCCATGAGCAGCCTCGAGG
CGCTGCTCTCCAAGCTGCCGTCCGTGGTGCCGGCACCCCCGCAGCCGCCGGGGTCCATGC
CGGGCGTGGCGCCGCCCTCGGACGCCGCGGCCAAGGAGGAGGAGGAGGCGGAGGACTACG
CCCACTGCCACGCGATGGACATGTCATCCATGCCGAGCAACGGCGGCGAGAGCACGAGCA
CGAGCGCCGCCGCCGCCGCCGCCACTCCCATGTCGTCCTACTTCCTCGACGCGGGCGGCA
ATCCCAGCGATGCCGGGTTCTAGGCCGGCCGCCGTCATCGTCGTTGTCCTTCTCCTCACG
ATGGCTTCTTCAATAGCTAGTGTAAAATCAATTAATTAATCCATGATATTATTCCCACGA
CCACCCATCGTTCCATCCCACCCACGCCAAAACCATGGACGGACTGCTTAACCCCAAATC
ATTGGCACAGTGTCTGTCCGTGCCTCACGCTGCTGATTACTAGTATATCGTTGGACGACT
TGGACTTGGACTTGATCTGGACGTAGTACGTATAGAGTACAATGTAACAGCTACGAAGTA
GCGGTGTGCATGCATGATTGGCTTTGGCTTTGTCCATCGCATTTACACATGCTTGTTATG
AAAAAAAAAAAAAAAAA



Homology of Contig U35_9202 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None