barSeed - Barley Seed Development Database

Probe CUST_5920_PI390587928

Source Contig U35_9203

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5920_PI390587928	Hv_44K_v2	AGAGAGATCATTAATGTCGCAAAGAAGATAAAGACTCCATCTCTATCTGTTTTCCTAAAG	512	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73160.4	4996	2e-24	1921 - 1980	100	60 / 60	minus	ABC06412
MLOC	MLOC_73160.2	5619	2e-24	2201 - 2260	100	60 / 60	minus	ABC06412
MLOC	MLOC_73160.3	5852	2e-24	2434 - 2493	100	60 / 60	minus	ABC06412
MLOC	MLOC_73160.1	5554	2e-24	2420 - 2479	100	60 / 60	minus	ABC06412
JLOC1	JLOC1_48690.2	5586	8e-25	3055 - 3114	100	60 / 60	plus
JLOC1	JLOC1_48690.1	5718	8e-25	3055 - 3114	100	60 / 60	plus
Harvest21	ABC48077	574	3e-25	512 - 571	100	60 / 60	plus
Harvest35	U35_9203	575	3e-25	513 - 572	100	60 / 60	plus

Contig Sequence (575 bp)

>U35_9203 575 Hv_44K_v2
GGGTTCAGAAATTAGAAGCTGACAGATTGCAGCTTGGGACTGAAATTACCACAACTGGCG
ACAATACATGGCCTATGCCTGTCAACCTCAAGCGGCTTATCTGGAATGCTCAGAAGACTT
TCAAGATTGACTTAAGAAGACCTTCTGACATGCACCCAATGGAAATTGTGGAAGCGATAG
ATAAGCTGCAAGAAAGACTTAAGGTTGTCCCTGGTGATGATGCCATGAGCATCGAAGCTC
AGAAGAACGCTACTTTATTCTTCAATATCCTGCTTCGTAGCACATTTGCTAGCAAGAGGG
TATTGAAAGAATACAGGCTTACAAAGGAATCTTTTGAATGGGTCATTGGTGAGATTGAAT
CGAGATTCCTCCAGTCTTTGGTAGCTCCTGGTGAAATGATTGGATGTGTGGCTGCACAGT
CCATTGGAGAACCGGCAACTCAGATGACTCTGAATACTTTCCATTATGCTGGTGTTAGTG
CTAAGAATGTTACCCTTGGGGTTCCCAGGTTAAGAGAGATCATTAATGTCGCAAAGAAGA
TAAAGACTCCATCTCTATCTGTTTTCCTAAAGCCT

Homology of Contig U35_9203 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g05860.1	1872	7e-115	protein\|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi3g16660.1	1863	8e-120
Arabidopsis v10	AT4G35800.1	1839	3e-105	\| Symbols: NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS \| RNA polymerase II large subunit \| chr4:16961115-16967892 REVERSE LENGTH=1839