barSeed - Barley Seed Development Database

Probe CUST_5910_PI390587928

Source Contig U35_9214

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5910_PI390587928	Hv_44K_v2	ATCATGATCTTGTACTGTGGTTTAGCAACGGAAAGAGGCATGAATTTGTATGCGAAAAAA	624	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54501.1	2818	9e-22	1904 - 1958	100	55 / 55	plus	ABC17711 ABC21718 ABC25907
JLOC1	JLOC1_35083.1	2392	5e-22	1492 - 1546	100	55 / 55	plus
Harvest21	ABC21718	645	3e-25	12 - 71	100	60 / 60	minus	ABC21718
Harvest35	U35_9214	695	3e-25	625 - 684	100	60 / 60	plus

Contig Sequence (695 bp)

>U35_9214 695 Hv_44K_v2
TCGGCATCAGCATTGGAGGCTTGGGCGAGAACCAGACTAGTCACAAGATAGAGAAGATCA
AGACGGACACCATGTTCATCTCCAACACCAAGAACGGCGTACGCGTCAAGACCTACGAGA
ACGGCTGCGGCTTCGCGCGCAAGGTGAAGTTCGCGCAGATCATGATGAGGAACGTGGCCA
ACCCCATCATCATCGACCAGCACTACTCCGCCTCCAACCGGGGAACTCACTGCGGCGCCC
CGAACGGGAGCGCGGTGGCTGTGGAGAACATCAACTACATCGACATCACCGGCACGTCGG
CGACGGAGCAGGCGGTGACGTTCGCGTGCAGCGACGCCATGCCGTGCAGGCGCCTGTATC
TGGACGGGGTGAACCTGACGACGGTCGGCGGGGGGAACACGTCCGCCTACTGCCACCAGG
CGTTCGGGAAGCACGTCGGGAACGTCCTCCCGGAGTCGTGCCTCGGCAAGGAGGACTTCG
TCCAGCTGCAAGCCCCGACCACCGGAGACGAAGAAGATGCTGACTGGTGAAAGAAACTGT
TCCAAGAATTTTGCCGCGCGTGGCACTGTATGTGATCTTGTAGCGCTTTTCGATCAAGAA
TGTAGCTTCAAGGCGATGTACCAAATCATGATCTTGTACTGTGGTTTAGCAACGGAAAGA
GGCATGAATTTGTATGCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_9214 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g46520.1	446	2e-64	protein\|polygalacturonase, putative, expressed
Brachypodium v1_2	Bradi2g18040.1	446	1e-83
Arabidopsis v10	None