barSeed - Barley Seed Development Database

Probe CUST_5908_PI390587928

Source Contig U35_9216

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5908_PI390587928	Hv_44K_v2	CGAACTCAAGATTGGAGATTTTGGCTTGGCAAGGACCACCACTGAGACTGATTTCATGAT	821	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.248	0.292	0.815	2.342	1.732	2.107
Raw	14.504	25.901	68.472	314.614	79.172	105.562

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71588.5	1986	6e-24	1146 - 1204	100	59 / 59	plus	None
MLOC	MLOC_71588.4	1419	6e-24	785 - 843	100	59 / 59	minus	None
MLOC	MLOC_71588.3	1350	6e-24	785 - 843	100	59 / 59	minus	None
MLOC	MLOC_71588.7	1528	6e-24	399 - 457	100	59 / 59	minus	None
MLOC	MLOC_71588.2	1858	6e-24	876 - 934	100	59 / 59	minus	None
MLOC	MLOC_71588.1	2043	6e-24	914 - 972	100	59 / 59	minus	None
JLOC1	JLOC1_47590.1	1932	3e-24	935 - 993	100	59 / 59	plus
Harvest21	ABC35842	575	3e-25	513 - 572	100	60 / 60	plus
Harvest35	U35_9216	884	3e-25	822 - 881	100	60 / 60	plus

Contig Sequence (884 bp)

>U35_9216 884 Hv_44K_v2
TGGAGCAGGAGCAGCAACCAACCAAGTCCTCGCCGGATCACGGGCATTTTCCCTCCAAAA
AGCTTCCTCTCCTCCTTTTCCCCTTTTCCCCAACGCTCTCCCCGCCTTATCTCCTCCCTC
ATCCATCCAACCAAGCTAGCGATCTCTCTCTCTCCCTTTCTCTTCCTCTGCGCGGCGTGC
GTTTCTTTCTTTCGTTAGCTCCTCGATCAAGGTGTTCGTGCGCAGACGTGCGGGTCGATG
CGCATGGAGGGTGGAGGCGTCGGGGCTGGAGGAGGAGGAGGAGGAGGCCACNGCGGCGGC
CATGGCCTCGGCGGGGAGGCGCAGATCAAGGGCACGCTCACCCACGGCGGCAGGTACGTG
CAGTACAACGTCTACGGCAACCTCTTTGAGGGCTCTGCCAAGTACGTCCCACCCATCCGA
CCTGTCGGCCGCGGCGCTTGCGGCATCATCTGTGCTGCGGTAAATGCACATACTCGTGAG
GAGGTCGCTATCAAGAAGATTGGTAATGCGTTTGACAACCAGATCGATGCCAAACGCACT
TTGCGCGAAGTAAAGCTGCTTCGCCACATGAATCATGAGAATGTGATTTCAATAAAGGAC
ATTATACGCCCACCAAGGCGGGAGAACTTCAACGATGTTTACATCGTCTACGAACTGATG
GACACTGATCTTCACCACCTTCTAAGATCAAACCAGCCACTCACAGATGATCACTGTCAG
TATTTTCTCTACCAAGTGCTCCGAGGACTAAAGTACGTGCATTCAGCAAAGGTCTTGCAC
CGGGACCTCAGGCCGAGCAACCTGCTGCTCAATGCCAAGCGCGAACTCAAGATTGGAGAT
TTTGGCTTGGCAAGGACCACCACTGAGACTGATTTCATGATGGA

Homology of Contig U35_9216 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g06060.1	395	3e-124	protein\|CGMC_MAPKCMGC_2_ERK.13 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
Brachypodium v1_2	Bradi3g16560.1	388	2e-127
Arabidopsis v10	AT4G01370.1	376	6e-107	\| Symbols: ATMPK4, MPK4 \| MAP kinase 4 \| chr4:567219-568889 FORWARD LENGTH=376