barSeed - Barley Seed Development Database

Probe CUST_5904_PI390587928

Source Contig U35_9220

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5904_PI390587928	Hv_44K_v2	TGGCAAAAAAGGAAGCTCATCGGCAGTGGCACATATGGCTGTGTATATGAAGCTACCAAT	836	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.024	1.318	1.469	0.826	0.619	0.611
Raw	44.309	76.123	85.043	70.586	20.371	21.520

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13593.1	1942	2e-24	604 - 663	100	60 / 60	minus	None
MLOC	MLOC_13593.2	1936	2e-24	511 - 570	100	60 / 60	minus	None
JLOC1	JLOC1_9214.1	2320	8e-25	1360 - 1419	100	60 / 60	plus
Harvest21	ABC20350	925	3e-25	837 - 896	100	60 / 60	plus
Harvest35	U35_9220	925	3e-25	837 - 896	100	60 / 60	plus

Contig Sequence (925 bp)

>U35_9220 925 Hv_44K_v2
GCGCCACCGCCAGCTCCACGCCGATCTCGAGGTCGCCGAGTAACATGATGGAGGCGGCGC
CGGCCAGGTCGTCGTCCACGCCCATGCTGCTGCCCCACCCTCTGCCGCTGCCCCACCAGG
ATGACTCGCCCTGCCGAGGGCCTGGGAGGCCGCTCCCCTCCCCGAGGATGTTCGACGGGG
ATTGCAACGGATCGGCTGACTTCCTGGGGGTCGCAGACACTGGAGGCGACAGGCCGTCCA
CGTTTCCAAGATTTATGCCCCAAACTGTTCAAAAGATTCACGAGCACAATGACTTACGGT
CAGCTGGCACACATGGGGCCACCTGTGGCCAACGGAGAAAGACATATAAAGAGAAGTTCC
AGGATAGCCCAAGTGACACCTTGAACTTTAGGTTGAACATTCCTGCTAAAAGTGCCCCGA
GCAGCGGGTTTTCAAGTCCTGTACAGAGTCCTCGAAGGTTGAGTAATGTAGACTTATCAT
CTGCTGCAATATCCATCCAAGGTAGCAATATATTGTCAGCACCATCACCATGGTCTTCAG
ATCAATCAGGATCTTCACCCCCTTCCACCTCACCTGAAAAATTTGTGGGTGGCCAGGAGC
GATCTCCTCGCTCTAGTCCTTTGAGAAGTCCTGCTCTTAGATCAAGATACCCAAGTGCAC
CTCCATCACCAATGCGTTCAAACTTGTTCCCAGAGAACCACACTTCTCGTTCTGAGGGCA
ATCCAAATCCCAATCTTCACCCATTACCTCTTCCTCCTGTTTCAATGAGCCCAAAGCAAA
CAAATTTTAGTCACCCATCAGTTCCAAAAGTTGAGACGCCCTCAATGGCTGGTCAGTGGC
AAAAAAGGAAGCTCATCGGCAGTGGCACATATGGCTGTGTATATGAAGCTACCAATAGGC
ACACCGGAGCTCTTTGTGCCATGAA

Homology of Contig U35_9220 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55560.2	778	1e-100	protein\|STE_MEKK_ste11_MAP3K.15 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
Brachypodium v1_2	Bradi1g07650.1	760	8e-116
Arabidopsis v10	None