barSeed - Barley Seed Development Database

Probe CUST_58_PI390587928

Source Contig U35_7813

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_58_PI390587928	Hv_44K_v2	CTTATAGTTGTACACATAGCTTGAAGAACAATCTTATATTATGGGACAGAGGGGGTATAT	1436	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.581	2.043	1.223	0.778	0.357	0.391
Raw	499.204	1011.637	536.500	520.742	83.804	103.371

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_25149.1	581	8e-25	153 - 212	100	60 / 60	minus
Harvest21	ABC14769	1543	3e-25	1437 - 1496	100	60 / 60	plus	ABC14769
Harvest35	U35_7813	1543	3e-25	1437 - 1496	100	60 / 60	plus

Contig Sequence (1543 bp)

>U35_7813 1543 Hv_44K_v2
TGAACCCAGAGTTTAAGGCAAAGTATGCCATTAACAGCTTGCAACATCCTTATTTGCAAA
TCATGTCCCGTATGCTACCGAGAAAGGAGCGTGATGTATGCTGTCGGCGACGTACTGATG
AGATCTACAAATTTTTGGTCCAACTTATCAATCTGAAACCTTACATTAAGCAAAATGATT
GTCCGGATGATGTTATGGATCGTCTTGAGGAAAGCTGTCATCCACAATCTGACCTTTGGG
AAGTTTATGCACTAAGGGCAGTTGATATTTTCCTTGATTGGTTGTTGGTTTTCTGGGAGC
CTCAGTTTCATCCCTTGATACGTGAGCACCACAACCACAAGGAGCTACTGCTAACAAGTG
CCCGTGAGTTAGCTGAAGGGTGTGCAGTTTTTCAGCCACTAAAACCTGACCCTGCTGATT
TCTTGGCGCATTTGCGGCCATATGCATCGGTATACATCAAGACAAGGAAGGAACAGTCTG
GGTATTATACAGCTAAAAAACAAGTACGTCTGCATGAAGAGTTCGATAATTATTTGGCTA
CATGCACATGGGATCATGCTATTGACTTCCATTCTTTCATGGAAAGTGCTCGTAGAGATG
ATGAGGATGCTCAGTTTGCAGAACTGGATGCCGATCTTGCCAAAATGTCCTTTGAGCGAA
AGGCCAAAATTGTTAAGCGGGGACACGAAATGAACTCTTACACTCAAAAGTTGAGAGATC
TCCTTCTTAATGATAAGGTAAAAGATCAACTTGCAAGTTTGATGGATCTGCTGGATGAAG
AAGGCTTTTTCAGCACTGATGATTCTTCTATTGATTGGGCTAAGGAATCGTTTACGAAAT
TGGTGGAGAAATTTAATGATTTAACTGAGAATTGCTTTGATGGATGCTATGCAATCCAAG
GAATAATGGATCTTCAAAAATTCTTACCAAGAAAAGATGATACATGTCATGACACTGTTC
AAATGGCAGACCTCCTCCTAAAGGTTGATCATGCAAACAAGGTGTGGAAGGGAAATCTTG
AGCATTTTTGGAGGGACACAAGGCATTATGAACATGGATACTACAACATGCTTAGACAAC
CTCTTGAGGAGGTGTTTAAATCAAGCGAGTTTGTAGCAATGGGACCCACATAATAGGATC
ACATCAATTGCAGATATCACATTCTGGGGAAATCAGATCGAGCAACACAAGCTCAGGGCA
GAAGATGCTAGCAATTTTCATGGCACACCCTTTTTAGCTATTTGTTCCTTTAGAGCATCT
TTTTCATGTGGTGTTTAACATGCCGCACTGGGGATGGATTGAATTATGTGAAAAGTTGTG
TTGCTGGACAATCACCTAATAACTCAGTGTTGTGTTCGCACGGATGCCTTTGGATCTTTA
TTAGTATTAGTAATAGAGTTAGCTTTCTTCATCTTACACAATTTCTCTTTCTTTTTCTTA
TAGTTGTACACATAGCTTGAAGAACAATCTTATATTATGGGACAGAGGGGGTATATATTA
ATTATATGACCAACTTTTTATGTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7813 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g31770.1	978	1e-69	protein\|expressed protein
Brachypodium v1_2	None
Arabidopsis v10	None