barSeed - Barley Seed Development Database

Probe CUST_5899_PI390587928

Source Contig U35_9225

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5899_PI390587928	Hv_44K_v2	TAGGCGCATGGTTCTTTTTGGTGGTAGAGGATCAGAATATGAGGTGCTTAGTGATGTCTG	961	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.238	0.404	0.990	1.573	1.161	1.483
Raw	23.689	63.766	136.812	343.570	89.594	124.053

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373801	1959	2e-24	106 - 165	100	60 / 60	minus	ABC11481
MLOC	MLOC_36647.1	2009	2e-24	1214 - 1273	100	60 / 60	minus	ABC18402
MLOC	MLOC_36647.2	1853	2e-24	1058 - 1117	100	60 / 60	minus	ABC18402
JLOC1	JLOC1_23626.1	1746	8e-25	834 - 893	100	60 / 60	plus
Harvest21	ABC19415	1021	3e-25	962 - 1021	100	60 / 60	plus
Harvest35	U35_9225	1021	3e-25	962 - 1021	100	60 / 60	plus

Contig Sequence (1021 bp)

>U35_9225 1021 Hv_44K_v2
CCAAGAACCATGTACAACACGCGGGGAATCGCCTGACAATCATGACGCCCTAGGAGACAA
ACACCATGGGAAGTCACAGAGCGCAAGTGCCAAGAATCGACAAGCAGCAGTAAGCAATGG
ACGCGGGCGCCGTCGGACACCTGGGCTACGACCAGGTACTATCCATCCTGCGCCTCCTTC
CAGCCGAGGCTGTGCTATCCTTCGCCGCCACCTGCCGCGCCTTTCGCGACTGGGCCTCCT
CCGACGTGCTCTGGGAGGCGCTCTGCCGACGGGACTGGGGGGCACGCGCCGCGGCGGCAG
CGCTCGTGGACTGGCGGTGCGGCGTGCCTTGGCGCCGCCTCTACGCCGAGGTCGCCCGAC
TGAGCGCCCTGCAGGCGCGCCGGCTCCAGGTGAAGGGCACCTCGCCACGGCCCCGTGCGT
CGCACTCCCTCAACCTCGTGGCCGGCTGGCTACTAGTCTTCGGCGGTGGCTGCGAGGGAG
GTCGTCATCTTGATGATATCTGGGCGACATATGTTGGAAATGGAGCCGGAACTGGATCGT
CCAATGTACTTAGCTGGCAGCAATTGGCCTCTGGCACTCCAAGTGGTCGTTTTGGTCATT
CATGTGTTCTCGTTGGTGATGCACTAGTCCTGTTTGGCGGGATTAATGACCGTGGGCTTC
GTTTGAATGACACATGGATAGGCGAAATAATTTGCGAAGAACCTGGCAGGATGATGATCT
CATGGAGACTGCTTCAGATAGGCCCCCTGGCACCATCTCCTCGCGGGGCCCATGCAGCCT
GCTGCATAGATGATAAGTTAATTGTGATTCACGGTGGGATAGGGGTGCATGGAAGCCGGC
TTGGTGATACATGGCTTCTTGATTTCTCCGATGGACTTCGATCTGGCAGTTGGCGCCAAA
TGGGGGACACTGGACCTTTGCCTTCAGCTCGTTCTGGCCACACCTTAACTTGGATTGGTG
ATAGGCGCATGGTTCTTTTTGGTGGTAGAGGATCAGAATATGAGGTGCTTAGTGATGTCT
G

Homology of Contig U35_9225 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g13360.1	449	9e-156	protein\|kelch repeat protein, putative, expressed
Brachypodium v1_2	Bradi3g18560.1	445	6e-173
Arabidopsis v10	AT1G51550.1	478	2e-89	Kelch repeat-containing F-box family protein \| chr1:19117646-19119291 REVERSE LENGTH=478