barSeed - Barley Seed Development Database

Probe CUST_5897_PI390587928

Source Contig U35_9227

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5897_PI390587928	Hv_44K_v2	AAATGTCATTACACTCCTTCAGATGGTGTGGCTAACGTGCCTTCTTTATGTTCTGAGACG	568	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.669	0.676	1.521	2.102	0.672	1.189
Raw	14.204	22.294	44.004	103.792	10.925	21.706

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362737	1561	3e-21	447 - 506	97	59 / 61	plus	ABC40172
Harvest21	ABC19470	627	1e-24	569 - 627	100	59 / 59	plus
Harvest35	U35_9227	628	3e-25	569 - 628	100	60 / 60	plus

Contig Sequence (628 bp)

>U35_9227 628 Hv_44K_v2
GAGCTGCGCTGTGCCGGGTGCGCTCGATCTCATCCCAGACGTGACCAACAACGACGCACC
ACAAGGCACAAGGCAGGCAAGCTCCCGGCTTATAAAAGGGCGCCCGCCGCGCTGGCCAAC
GCCGCTGACAGGCAGTCGCAGGCGCGGCCGGTCGGGCAGAAGTTTCCCCTTCCCCAGCCA
GCCGCAGCCCACAGGAGCGGCCGAGTCGCCGAAAACTCCCCGTCCGATCGGGCCAAAAGC
AGAGACGAGTCTTGCTCGCTCCCAAACGGCCGTTTTCCCCTTCCGCGCATCGCCACAAAT
ATCCTTCCTCCTCCCGCTGCTCCTCCTCCTCCTCCTCGGCGTGGTCGCTCGCGGGCGGAG
ATCCGGGAGGGGAGATGGCCAAGAGCGCAGGAGGGGTGCTGCTGCCGGTGTCCGCCGATG
CGGGGAAGGGCGACGGCGAGGCCGCGCTGTTCAAGGGCTCCGCCATGACCCGCCGCGGCG
CCGTCGCCGCGCTCTCCTACATGTCCTGCTCCGTTTTGCTGGTGATGTTTAACAAGGCGG
CTCTATCTTCGTATAAATTCCCTTGTGCAAATGTCATTACACTCCTTCAGATGGTGTGGC
TAACGTGCCTTCTTTATGTTCTGAGACG

Homology of Contig U35_9227 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None