barSeed - Barley Seed Development Database

Probe CUST_5890_PI390587928

Source Contig U35_9235

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5890_PI390587928	Hv_44K_v2	GTTTCCGATTTCTTTTTAACCAGGACACAGATCTAGATGTAAAATAGTTATTGCACGTCT	856	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.631	4.487	1.826	1.156	0.467	0.580
Raw	127.281	1379.314	448.119	466.401	62.811	87.230

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367038	1013	2e-24	858 - 917	100	60 / 60	plus	None
MLOC	MLOC_21907.1	1253	2e-24	82 - 141	100	60 / 60	plus	ABC29833
JLOC1	JLOC1_15190.1	616	8e-25	85 - 144	100	60 / 60	plus
Harvest35	U35_34939	822	3e-25	103 - 162	100	60 / 60	plus
Harvest35	U35_9235	1067	3e-25	857 - 916	100	60 / 60	plus

Contig Sequence (1067 bp)

>U35_9235 1067 Hv_44K_v2
GCAAACTCGCAATCACAAACAAGCGCATGGCCACCTCGACGATCACATCCCCTCCGGCGC
CGGCAGCGACGCTGCCACTGGCCGGGCGCGTGGCCATCGTCACCGGCGCGTCGCGCGGCA
TCGGCCACGCCATCGCGATCCACCTGTCCTCCCTCGGCGCCAGCCTGGTCCTCGGGTACG
CCTCCAGCTCTCAGCAGGCCGACGCGCTGGCCGCTGAGCTCCCGCGTGCCGTGGCGGTGA
AGGCCGACGTCTCCGACGAGGCGGGCGTCCGGTCCCTCTTTGACGCGGCAGAGTCGGCTT
TCGGCGGCGCGGCGCACATCCTCGTGGCCTGCGCGGGCATGGCCATCGGGACCTACCCGT
CCCTCGCCAACACCGCCACCGCGGACTTCGACAGCGTCTTCGCCGTCAACACCCGGGGAG
CGTTCCTGTGCCTCCGCGAGGCGGCGAACCGGCTGCGGCGCGGCGGCGGGGGCCGGATCG
TGGCCGTGTCCTCGACGCTGGCGGCGACGCTGCTCCCTGGCTACGCGGCGTACGCGGCGT
CCAAGGCGGCTGTGGAAGCCATGGTGCGGGTGGCAGCCAAGGAGCTCGGATCCGCGCGGG
TGACGGTGAACTGCGTCGCGCCGGGGCGTGTGGCGACGGAGCTCTTCTTCGAGGGGAAGA
GCGAGGAGGCGGTGGAGAGGTTCAGGGCCGGGCACCCGATGGGGCGGCTTGGCGAGGTCG
GCGACATCGCGCCTGCGGTCGGGTTCCTCTGCACCGACGCGGCTGAATGGGTCAACGGTC
AGGTTATTCGGGTTAACGGCGGCATTGCTTAGCCTTAGCGTGTCTCTGTTTCTCAGTTTC
TTCCTTCCAAATGGATGTTTCCGATTTCTTTTTAACCAGGACACAGATCTAGATGTAAAA
TAGTTATTGCACGTCTAAATAACTAAACTACAACTAAAAAGGAGAAAAAAATATTCAATG
AATCTTGATGTAAGATCAATGATATAGAACTTAAATGTGTAATACTTATCTCACATCTAG
TTGTGTTTTAGTAAAACCGTTCTTATAATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_9235 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g07440.1	262	3e-117	protein\|versicolorin reductase, putative, expressed
Brachypodium v1_2	Bradi1g56790.1	263	4e-118
Arabidopsis v10	AT3G03980.1	270	6e-72	NAD(P)-binding Rossmann-fold superfamily protein \| chr3:1031786-1033081 FORWARD LENGTH=270